RNA id: XR_005639006.1


Basic Information

Item Value
RNA id XR_005639006.1
length 528
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id LOC120557699
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 40601428 ~ 40609564 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCCATAACCATCAGAAATACAAAGGTGGCCGACAGCGGAAACTACACctgtttttttccaaatcttCGGCCACCTCAAACATTCAAGATTGAGCTTGTTGTTGGTGCAGCTCCAAAACCTTTTGTCTATCACGTAAAACTAAGGATGAATTTGTTCTGCAATGTGAGGTTCATGGCTCTCCAAAACCTAAAGTAGAGTGGCTGGACAGTGCTACAAAGATCCTTCCTGCTGAGGAGCCCCAGGTCTCAGAGAGAGGAGGCCGTTTCTACATCACTCTCAACGCTACTGTGACCAGGGCTGACTACTATTACTGTGTAGCCACTCAGGAGACCATCAGCCTTCAGATTTATGCTGGAATTTATTTCAATGGTGATCTACAGCCATCTATCAAGATTATTAGTGAAACAAAACAGGGCAGTGCTGCAGTGTGTGGTTCGAGGTACTTCTGCAGACCTTAAAGTGGAATGGCAGGACAGTGCTGGAAAGACACTTGCTGCCAAAGAGCCCCAGTTCTCAGAAAGAGGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59764 lncRNA upstream 53580 40537311 ~ 40547848 (+) True LOC120557674
TU59749 lncRNA upstream 56053 40431541 ~ 40545375 (+) True G44621
XR_005638999.1 lncRNA upstream 95443 40504194 ~ 40505985 (+) True LOC120557692
TU59831 lncRNA upstream 106806 40472624 ~ 40494622 (+) True G44689
TU59769 lncRNA upstream 168843 40411768 ~ 40432585 (+) True G44635
XR_005639007.1 lncRNA downstream 46295 40655859 ~ 40656646 (+) True LOC120557700
TU59754 lncRNA downstream 89496 40699060 ~ 40719215 (+) True G44622
TU59859 lncRNA downstream 104117 40713681 ~ 40933867 (+) False G44711
TU59861 lncRNA downstream 104117 40713681 ~ 40934131 (+) True G44711
TU59762 lncRNA downstream 107237 40716801 ~ 40775058 (+) True LOC120557697
XM_039797160.1 mRNA upstream 17723 40554950 ~ 40583705 (+) True LOC120557127
XM_039798224.1 mRNA upstream 60197 40519942 ~ 40541231 (+) False LOC120557674
XM_039797157.1 mRNA upstream 154782 39791011 ~ 40446646 (+) True LOC120557124
XM_039798212.1 mRNA upstream 170087 40156219 ~ 40431341 (+) True LOC120557666
XM_039798233.1 mRNA upstream 827178 39747173 ~ 39774250 (+) True LOC120557680
XM_039798225.1 mRNA downstream 35624 40645188 ~ 40647514 (+) True LOC120557675
XM_039798243.1 mRNA downstream 57288 40666852 ~ 40668742 (+) True LOC120557687
XM_039798240.1 mRNA downstream 75258 40684822 ~ 40716121 (+) True LOC120557684
XM_039798235.1 mRNA downstream 112132 40721696 ~ 40734477 (+) True LOC120557681
XM_039798237.1 mRNA downstream 112132 40721696 ~ 40734477 (+) False LOC120557681
XR_005638993.1 other upstream 60197 40519942 ~ 40541231 (+) False LOC120557674
TU59833 other upstream 94858 40480676 ~ 40506570 (+) True G44690
TU59835 other upstream 95372 40504352 ~ 40506056 (+) False LOC120557692
TU59760 other upstream 437818 40156208 ~ 40163610 (+) False LOC120557666
TU59701 other upstream 779520 39813960 ~ 39821908 (+) False G44581
XR_005638994.1 other downstream 56635 40666199 ~ 40667506 (+) False LOC120557687
TU60455 other downstream 1141439 41751003 ~ 41763651 (+) False LOC120557139
TU60464 other downstream 1260166 41869730 ~ 41880367 (+) True G45186
TU60460 other downstream 1287458 41897022 ~ 41902618 (+) False dynlrb1
TU60468 other downstream 1295965 41905529 ~ 41912086 (+) True map1lc3a

Expression Profile