RNA id: XR_005639024.1


Basic Information

Item Value
RNA id XR_005639024.1
length 261
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id LOC120557846
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 33784327 ~ 33785135 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAGAACCTGCCCAACGACGTGCTATGCTGAGCTTGACCGCTATCTTCCTCGACTGATGACCTTATTCAgacggaaggcatcaaaaactgggaagacagcagatgctctggctgaaattttaaaaatccatgatgaacagGAAATCCATGCCATACACACCAAGCGCACTACTGTTCTCCACGTCCTTCCTGTGTATCTGCGTGAGGACGTCTCTGGATGTTTAAGAACCTGCACAgatgAGTCTGATGAGCCAGAGCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58340 lncRNA upstream 7936 33776190 ~ 33776391 (+) True G43444
TU58290 lncRNA upstream 215417 33568467 ~ 33568910 (+) True G43413
TU58288 lncRNA upstream 220838 33559300 ~ 33563489 (+) True G43412
TU58284 lncRNA upstream 229149 33553375 ~ 33555178 (+) True G43409
TU58283 lncRNA upstream 242661 33541460 ~ 33541666 (+) True G43408
TU58348 lncRNA downstream 82445 33867580 ~ 33868547 (+) True G43452
TU58375 lncRNA downstream 170822 33955957 ~ 33956156 (+) True G43474
TU58417 lncRNA downstream 285735 34070870 ~ 34071072 (+) True G43512
TU58420 lncRNA downstream 290736 34075871 ~ 34147068 (+) True G43514
XR_005639028.1 lncRNA downstream 372870 34158005 ~ 34159010 (+) True LOC120557850
XM_039798455.1 mRNA upstream 18819 33760090 ~ 33765508 (+) True barx1
XM_039798454.1 mRNA upstream 18819 33760101 ~ 33765508 (+) False barx1
XM_039798464.1 mRNA upstream 266203 33516838 ~ 33518124 (+) True LOC120557830
XM_039798467.1 mRNA upstream 280019 33503798 ~ 33504308 (+) True LOC120557832
XM_039798468.1 mRNA upstream 348219 33435527 ~ 33436108 (+) True LOC120557833
XM_039798431.1 mRNA downstream 241176 34026311 ~ 34040283 (+) True znf831
XM_039798434.1 mRNA downstream 241176 34026311 ~ 34040283 (+) False znf831
XM_039798432.1 mRNA downstream 241176 34026311 ~ 34040283 (+) False znf831
XM_039798460.1 mRNA downstream 262297 34047432 ~ 34067342 (+) True LOC120557827
XM_039798461.1 mRNA downstream 262297 34047432 ~ 34067342 (+) False LOC120557827
TU58196 other upstream 438521 33340328 ~ 33345806 (+) False LOC120557806
XR_005639022.1 other upstream 447560 33262195 ~ 33336767 (+) True angpt4
TU58122 other upstream 572009 33187738 ~ 33212318 (+) True G43277
TU58042 other upstream 743063 33037934 ~ 33041264 (+) False LOC120556790
TU57843 other upstream 1312722 32470795 ~ 32471605 (+) True G43051
TU58589 other downstream 880101 34665236 ~ 34667182 (+) True G43656
TU58590 other downstream 880101 34665236 ~ 34667182 (+) False G43656
TU58591 other downstream 880101 34665236 ~ 34667182 (+) False G43656
XR_005639074.1 other downstream 1654842 35439977 ~ 35440139 (+) True LOC120558245
unassigned_transcript_205 other downstream 1678637 35463772 ~ 35486235 (+) True LOC120556915