RNA id: XR_005639026.1


Basic Information

Item Value
RNA id XR_005639026.1
length 149
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id LOC120557848
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 34331444 ~ 34333902 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGGCAGAAGTGTGTTGCTAAGAGCTTGACATGTTCCCAGTCAGTGAAATAATAAAGACAAGGATCAGAAAGGGGAGGATGGAACACCTTTATAACTGGCAGCCCTGCACTCTATGTGGAAAGACATGGTCTCCATCCTGGCAGCCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639027.1 lncRNA upstream 101512 34223432 ~ 34229932 (+) True LOC120557849
TU58445 lncRNA upstream 137118 34194028 ~ 34194326 (+) True G43537
TU58441 lncRNA upstream 156638 34174509 ~ 34174806 (+) True G43533
XR_005639028.1 lncRNA upstream 172434 34158005 ~ 34159010 (+) True LOC120557850
TU58420 lncRNA upstream 184376 34075871 ~ 34147068 (+) True G43514
TU58519 lncRNA downstream 62011 34395913 ~ 34396336 (+) True G43595
TU58524 lncRNA downstream 66473 34400375 ~ 34400808 (+) True G43600
TU58537 lncRNA downstream 132964 34466866 ~ 34467348 (+) True G43613
TU58544 lncRNA downstream 233409 34567311 ~ 34567621 (+) True G43620
TU58551 lncRNA downstream 268304 34602206 ~ 34647158 (+) True G43627
XM_039798460.1 mRNA upstream 264102 34047432 ~ 34067342 (+) True LOC120557827
XM_039798461.1 mRNA upstream 264102 34047432 ~ 34067342 (+) False LOC120557827
XM_039798431.1 mRNA upstream 291161 34026311 ~ 34040283 (+) True znf831
XM_039797130.1 mRNA downstream 36327 34370229 ~ 34371094 (+) True LOC120557093
XM_039797860.1 mRNA downstream 671040 35004942 ~ 35006128 (+) True LOC120557490
XM_039797861.1 mRNA downstream 829582 35163484 ~ 35199996 (+) True ube2v1
XM_039796701.1 mRNA downstream 941195 35275097 ~ 35278434 (+) True LOC120556883
XM_039796513.1 mRNA downstream 982575 35316477 ~ 35319169 (+) True LOC120556789
TU58196 other upstream 985638 33340328 ~ 33345806 (+) False LOC120557806
XR_005639022.1 other upstream 994677 33262195 ~ 33336767 (+) True angpt4
TU58122 other upstream 1119126 33187738 ~ 33212318 (+) True G43277
TU58042 other upstream 1290180 33037934 ~ 33041264 (+) False LOC120556790
TU57843 other upstream 1859839 32470795 ~ 32471605 (+) True G43051
TU58589 other downstream 331334 34665236 ~ 34667182 (+) True G43656
TU58590 other downstream 331334 34665236 ~ 34667182 (+) False G43656
TU58591 other downstream 331334 34665236 ~ 34667182 (+) False G43656
XR_005639074.1 other downstream 1106075 35439977 ~ 35440139 (+) True LOC120558245
unassigned_transcript_205 other downstream 1129870 35463772 ~ 35486235 (+) True LOC120556915