RNA id: XR_005639027.1


Basic Information

Item Value
RNA id XR_005639027.1
length 720
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id LOC120557849
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 34223432 ~ 34229932 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctgggagacttctaaatgagggcacacatCAAAGACAAAGGACATGAAGGAGGAACTGAAACGAGGAGTGAAGAGCAAGAGGAAGAGCATGagcaagaagaagaggaagattaCCGCCTTGCTGTCGTTGCCGTACAGCAGCAGGCCGGCCTTGGTGACGGTGGCGGCCCGGCTGGCTCCGGGGATCTGCAGCGGCTGGCCGGTAGCTATGGAGCCATTATCCACCAGAGTGGAGCCGTAGAAAGTCACTTTCTATAGAAAGAGAGACACCAAACAGCACAACTTTGAGAGAACTGATGGTTGTGTATTACCTTGGCGTTGTCTTTCTTCTGAATGCACTCATATGTGGCTCCCTCCTGTGGCTGGCTGATCCTCGGGGCCTTCCCTTCCGCTATCAGCCTCACCGCCTCCACCTGGAACCAGAACAATGCAGTTCCAGTCAGCGGAGCTAACatgtgtgttatctgtatgGATTTTGCCATCACTGTGTTGTTATGTTGGTTGAACTGACTGTAGGCAACTGAAGAACATATTTTTCTTTACCTACATGTTATCATGGTAATAGCTCGAACCTGGATTCACATATTAGTGTACTTAATGAAAAGACACTCAGTACTTTGACTCTTTCATCAGGCCAAGATGGTCAACAgctgtttttgttcattttgctatttaaagctttagtgcgtaactttttgatattaatgaacgtccgttaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58445 lncRNA upstream 29106 34194028 ~ 34194326 (+) True G43537
TU58441 lncRNA upstream 48626 34174509 ~ 34174806 (+) True G43533
XR_005639028.1 lncRNA upstream 64422 34158005 ~ 34159010 (+) True LOC120557850
TU58420 lncRNA upstream 76364 34075871 ~ 34147068 (+) True G43514
TU58417 lncRNA upstream 152360 34070870 ~ 34071072 (+) True G43512
XR_005639026.1 lncRNA downstream 101512 34331444 ~ 34333902 (+) True LOC120557848
TU58519 lncRNA downstream 165981 34395913 ~ 34396336 (+) True G43595
TU58524 lncRNA downstream 170443 34400375 ~ 34400808 (+) True G43600
TU58537 lncRNA downstream 236934 34466866 ~ 34467348 (+) True G43613
TU58544 lncRNA downstream 337379 34567311 ~ 34567621 (+) True G43620
XM_039798460.1 mRNA upstream 156090 34047432 ~ 34067342 (+) True LOC120557827
XM_039798461.1 mRNA upstream 156090 34047432 ~ 34067342 (+) False LOC120557827
XM_039798431.1 mRNA upstream 183149 34026311 ~ 34040283 (+) True znf831
XM_039797130.1 mRNA downstream 140297 34370229 ~ 34371094 (+) True LOC120557093
XM_039797860.1 mRNA downstream 775010 35004942 ~ 35006128 (+) True LOC120557490
XM_039797861.1 mRNA downstream 933552 35163484 ~ 35199996 (+) True ube2v1
XM_039796701.1 mRNA downstream 1045165 35275097 ~ 35278434 (+) True LOC120556883
XM_039796513.1 mRNA downstream 1086545 35316477 ~ 35319169 (+) True LOC120556789
TU58196 other upstream 877626 33340328 ~ 33345806 (+) False LOC120557806
XR_005639022.1 other upstream 886665 33262195 ~ 33336767 (+) True angpt4
TU58122 other upstream 1011114 33187738 ~ 33212318 (+) True G43277
TU58042 other upstream 1182168 33037934 ~ 33041264 (+) False LOC120556790
TU57843 other upstream 1751827 32470795 ~ 32471605 (+) True G43051
TU58589 other downstream 435304 34665236 ~ 34667182 (+) True G43656
TU58590 other downstream 435304 34665236 ~ 34667182 (+) False G43656
TU58591 other downstream 435304 34665236 ~ 34667182 (+) False G43656
XR_005639074.1 other downstream 1210045 35439977 ~ 35440139 (+) True LOC120558245
unassigned_transcript_205 other downstream 1233840 35463772 ~ 35486235 (+) True LOC120556915

Expression Profile