RNA id: XR_005639035.1


Basic Information

Item Value
RNA id XR_005639035.1
length 502
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id LOC120557914
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 30410280 ~ 30412400 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGTCCTACAATTTCCAAAGGACTTGAACGCAGCGTCAACAAGGAAACGAAACGTTACTGCGGCCCCCCAACAAGCATCAAACTGAAGAAGTTAGCATTACTACAGTCAGCTGCCCGGTGAGTTCCTTGGTACAGCACCCCTCCGCACAAAACCCCCGCAAAGGCAGAGGAAAGCCGCGTGGCTCCAAACGACCAGGAGAAAATAAGTATTATTAACTTCCACAGAGTAATGTCAGTATTAACAACGTTACAGATAGTTTCAGGTAGTCGCTAGTCGTTTCGACCAAGTCATCTGTGTCGTGACGAGGAGGGCTTCCTCGCTGTGTTGATTTCTTTCAGAACCGGCAGCCGATAACGGTTAAACAAGTGGAGATGCCTCAAAAACAGAGGTCCAAGACCTGGACGGAGCTGAAACAAGCTGGAAATGAATGTTTCAAGACGGGCCAGTATGGAGAGGCCACCAATATTTACAGCCAGGCAATCAAAGAGCTGGAGAAGTCCA

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57500 lncRNA upstream 68211 30341730 ~ 30342069 (+) True G42772
TU57498 lncRNA upstream 71239 30337411 ~ 30339041 (+) True G42770
TU57494 lncRNA upstream 75465 30334224 ~ 30334815 (+) True G42766
TU57483 lncRNA upstream 77545 30318179 ~ 30332735 (+) True G42755
TU57478 lncRNA upstream 98238 30311595 ~ 30312042 (+) True G42752
TU57527 lncRNA downstream 79200 30491600 ~ 30491841 (+) True G42792
TU57528 lncRNA downstream 105862 30518262 ~ 30528346 (+) True G42793
TU57532 lncRNA downstream 179543 30591943 ~ 30592595 (+) True G42797
TU57581 lncRNA downstream 261427 30673827 ~ 30677017 (+) True G42836
TU57621 lncRNA downstream 397429 30809829 ~ 30810064 (+) True G42870
XM_039798611.1 mRNA upstream 2435 30389010 ~ 30407845 (+) True LOC120557913
XM_039798610.1 mRNA upstream 32384 30354966 ~ 30377896 (+) True LOC120557912
XM_039798602.1 mRNA upstream 211378 30194639 ~ 30198902 (+) False mych
XM_039798601.1 mRNA upstream 211378 30196286 ~ 30198902 (+) True mych
XM_039797120.1 mRNA upstream 274446 30109535 ~ 30135834 (+) True ergic3
XM_039796713.1 mRNA downstream 16607 30429007 ~ 30442999 (+) False tomm34
XM_039796712.1 mRNA downstream 16653 30429053 ~ 30442999 (+) True tomm34
XM_039796714.1 mRNA downstream 17164 30429564 ~ 30442999 (+) False tomm34
XM_039799187.1 mRNA downstream 92294 30504694 ~ 30513488 (+) True abraa
XM_039798881.1 mRNA downstream 266916 30679316 ~ 30685535 (+) True lsm3
TU57106 other upstream 1168027 29240413 ~ 29242253 (+) True G42449
XR_005639013.1 other upstream 3711709 26653260 ~ 26698571 (+) False anks1ab
TU56292 other upstream 3861481 26542507 ~ 26548799 (+) False G41850
TU56293 other upstream 3861481 26542507 ~ 26548799 (+) False G41850
TU56251 other upstream 4136965 26268602 ~ 26273315 (+) True G41825
TU57834 other downstream 2047732 32460132 ~ 32460863 (+) True G43045
TU57843 other downstream 2058395 32470795 ~ 32471605 (+) True G43051
TU58042 other downstream 2625534 33037934 ~ 33041264 (+) False LOC120556790
TU58122 other downstream 2775338 33187738 ~ 33212318 (+) True G43277
XR_005639022.1 other downstream 2849795 33262195 ~ 33336767 (+) True angpt4

Expression Profile