RNA id: XR_005639082.1


Basic Information

Item Value
RNA id XR_005639082.1
length 134
RNA type snoRNA
GC content 0.40
exon number 1
gene id LOC120558254
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 13191778 ~ 13191911 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGAGGACTGAGAAGGTTGAGCAGCTTGTGCTGTGCTGTTATAACTGGTTATAACCTCCAATAGTAACCCACAAACCACTCAATTGATCATCTTTGTAATGAGCTGATTTGTAGTGTGTTTGTgaacaaaacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51006 lncRNA upstream 75206 13115654 ~ 13116572 (+) True G38001
XR_005638901.1 lncRNA upstream 111891 13075419 ~ 13079887 (+) True LOC120556864
TU50984 lncRNA upstream 118953 13071974 ~ 13072825 (+) True G37980
TU50982 lncRNA upstream 119908 13070171 ~ 13071870 (+) True G37978
TU50974 lncRNA upstream 127412 13063334 ~ 13064366 (+) True G37970
TU51049 lncRNA downstream 104465 13296376 ~ 13303207 (+) False vamp3
TU51054 lncRNA downstream 113520 13305431 ~ 13312141 (+) False per3
TU51065 lncRNA downstream 127773 13319684 ~ 13372351 (+) False mdm4
TU51173 lncRNA downstream 265018 13456929 ~ 13488836 (+) False tfeb
XR_005638907.1 lncRNA downstream 583870 13775781 ~ 13777150 (+) True LOC120556887
XM_039798418.1 mRNA upstream 131003 12925713 ~ 13060775 (+) True cpne5b
XM_039796317.1 mRNA upstream 283843 12825516 ~ 12907935 (+) True kif21b
XM_039796936.1 mRNA upstream 381988 12776871 ~ 12809790 (+) False srpk1b
XM_039796934.1 mRNA upstream 381988 12782160 ~ 12809790 (+) False srpk1b
XM_039796937.1 mRNA upstream 381988 12789348 ~ 12809790 (+) True srpk1b
XM_039796891.1 mRNA downstream 13558 13205469 ~ 13208256 (+) True spcs1
XM_039797962.1 mRNA downstream 27432 13219343 ~ 13264340 (+) False camk1b
XM_039797961.1 mRNA downstream 27433 13219344 ~ 13264340 (+) True camk1b
XM_039796323.1 mRNA downstream 104508 13296419 ~ 13303615 (+) True vamp3
XM_039796569.1 mRNA downstream 113504 13305415 ~ 13329332 (+) True per3
TU50929 other upstream 334365 12825529 ~ 12857413 (+) False kif21b
XR_005638946.1 other upstream 450730 12735867 ~ 12741048 (+) False b3galt6
TU50865 other upstream 472306 12716160 ~ 12719472 (+) False cdab
TU50647 other upstream 804603 12386171 ~ 12387175 (+) True G37730
XR_005639029.1 other upstream 913154 12274760 ~ 12278624 (+) True LOC120557851
XR_005639080.1 other downstream 1336 13193247 ~ 13193320 (+) True LOC120558251
TU51031 other downstream 13573 13205484 ~ 13208258 (+) False spcs1
unassigned_transcript_200 other downstream 94328 13286239 ~ 13286311 (+) True trnar-acg_15
TU51060 other downstream 173643 13365554 ~ 13368289 (+) False mdm4
TU51174 other downstream 265018 13456929 ~ 13528319 (+) False tfeb

Expression Profile