RNA id: unassigned_transcript_179


Basic Information

Item Value
RNA id unassigned_transcript_179
length 72
RNA type tRNA
GC content 0.65
exon number 1
gene id trnae-cuc_2
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 3282931 ~ 3283002 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTCTCACCGccgcggcccgggttcgattcccggtCAGGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47686 lncRNA upstream 9385 3273147 ~ 3273546 (+) True G35627
TU47621 lncRNA upstream 58769 3223739 ~ 3224162 (+) True G35585
TU47626 lncRNA upstream 204527 3020476 ~ 3078404 (+) True G35589
TU47620 lncRNA upstream 215268 3001003 ~ 3067663 (+) True G35584
TU47669 lncRNA downstream 2560 3285562 ~ 3328507 (+) False G35618
TU47840 lncRNA downstream 357917 3640919 ~ 3641407 (+) True G35704
TU47868 lncRNA downstream 387688 3670690 ~ 3677753 (+) True G35718
TU47887 lncRNA downstream 484374 3767376 ~ 3767576 (+) True G35736
TU47888 lncRNA downstream 484850 3767852 ~ 3768388 (+) True G35737
XM_039798877.1 mRNA upstream 209661 2964127 ~ 3073270 (+) True mtss1
XM_039797837.1 mRNA upstream 333364 2916796 ~ 2949567 (+) True osgn1
XM_039798727.1 mRNA upstream 400168 2863536 ~ 2882763 (+) True ccdc51
XM_039797681.1 mRNA upstream 446803 2826889 ~ 2836128 (+) True LOC120557395
XM_039798535.1 mRNA downstream 170598 3453600 ~ 3589612 (+) True epha8
XM_039799099.1 mRNA downstream 476492 3759494 ~ 3766040 (+) True c4h1orf50
XM_039797012.1 mRNA downstream 524170 3807172 ~ 3830945 (+) True nuf2
XM_039799131.1 mRNA downstream 611303 3894305 ~ 3913220 (+) True cfap92
XM_039798528.1 mRNA downstream 932522 4215524 ~ 4242500 (+) True hdac11
TU47612 other upstream 265806 2930924 ~ 3017125 (+) True G35578
TU47547 other upstream 535159 2747220 ~ 2747772 (+) True G35534
TU47274 other upstream 694769 2586175 ~ 2588162 (+) False G35364
TU47255 other upstream 788340 2487994 ~ 2494591 (+) True G35359
TU47237 other upstream 894957 2385615 ~ 2387974 (+) True LOC120556786
unassigned_transcript_180 other downstream 2828 3285830 ~ 3285901 (+) True trnae-cuc_3
TU47670 other downstream 8802 3291804 ~ 3328507 (+) False G35618
TU47821 other downstream 170791 3453793 ~ 3556578 (+) False epha8
TU47964 other downstream 665832 3948834 ~ 3950128 (+) True G35791
TU48122 other downstream 1204533 4487535 ~ 4558029 (+) False G35921