RNA id: unassigned_transcript_183


Basic Information

Item Value
RNA id unassigned_transcript_183
length 72
RNA type tRNA
GC content 0.65
exon number 1
gene id trnae-cuc_4
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 8616998 ~ 8617069 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTCTCACCGccgcggcccgggttcgattcccggtCAGGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49452 lncRNA upstream 4011 8612296 ~ 8612987 (+) True G36890
TU49447 lncRNA upstream 5910 8610361 ~ 8611088 (+) True G36887
TU49374 lncRNA upstream 171407 8445392 ~ 8445591 (+) True G36836
TU49365 lncRNA upstream 191467 8422173 ~ 8425531 (+) True G36827
TU49358 lncRNA upstream 197417 8418304 ~ 8419581 (+) True G36826
TU49464 lncRNA downstream 7652 8624721 ~ 8660277 (+) True G36900
XR_005639054.1 lncRNA downstream 268704 8885773 ~ 8940038 (+) True LOC120558080
TU49576 lncRNA downstream 422394 9039463 ~ 9039769 (+) True G36988
TU49580 lncRNA downstream 613011 9230080 ~ 9230363 (+) True G36991
TU49578 lncRNA downstream 613395 9230464 ~ 9230954 (+) True G36990
XM_039796425.1 mRNA upstream 120339 8483190 ~ 8496659 (+) True gata2a
XM_039796424.1 mRNA upstream 120339 8487374 ~ 8496659 (+) False gata2a
XM_039796426.1 mRNA upstream 120339 8487375 ~ 8496659 (+) False gata2a
XM_039796428.1 mRNA upstream 120339 8488566 ~ 8496659 (+) False gata2a
XM_039796427.1 mRNA upstream 121269 8487922 ~ 8495729 (+) False gata2a
XM_039799038.1 mRNA downstream 174671 8791740 ~ 8798039 (+) False uba3
XM_039799039.1 mRNA downstream 174704 8791773 ~ 8798039 (+) True uba3
XM_039799036.1 mRNA downstream 174718 8791787 ~ 8798039 (+) False uba3
XM_039799035.1 mRNA downstream 174811 8791880 ~ 8798039 (+) False uba3
XM_039799037.1 mRNA downstream 175019 8792088 ~ 8798039 (+) False uba3
TU49260 other upstream 388278 8227762 ~ 8228720 (+) True G36744
TU48863 other upstream 1358048 7242209 ~ 7258950 (+) False G36458
TU48651 other upstream 1978611 6635302 ~ 6638387 (+) False setmar
TU48489 other upstream 2564229 6035100 ~ 6052769 (+) False rybpb
TU48469 other upstream 2692598 5920924 ~ 5924400 (+) True G36156
unassigned_transcript_186 other downstream 24961 8642030 ~ 8642101 (+) True trnae-cuc_5
unassigned_transcript_189 other downstream 93940 8711009 ~ 8711080 (+) True trnae-cuc_6
unassigned_transcript_190 other downstream 121898 8738967 ~ 8739038 (+) True trnae-cuc_7
unassigned_transcript_191 other downstream 124637 8741706 ~ 8741777 (+) True trnae-cuc_8
unassigned_transcript_192 other downstream 190547 8807616 ~ 8807688 (+) True trnar-acg_13