RNA id: unassigned_transcript_189


Basic Information

Item Value
RNA id unassigned_transcript_189
length 72
RNA type tRNA
GC content 0.65
exon number 1
gene id trnae-cuc_6
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 8711009 ~ 8711080 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTCTCACCGccgcggcccgggttcgattcccggtCAGGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49464 lncRNA upstream 50732 8624721 ~ 8660277 (+) True G36900
TU49452 lncRNA upstream 98022 8612296 ~ 8612987 (+) True G36890
TU49447 lncRNA upstream 99921 8610361 ~ 8611088 (+) True G36887
TU49374 lncRNA upstream 265418 8445392 ~ 8445591 (+) True G36836
TU49365 lncRNA upstream 285478 8422173 ~ 8425531 (+) True G36827
XR_005639054.1 lncRNA downstream 174693 8885773 ~ 8940038 (+) True LOC120558080
TU49576 lncRNA downstream 328383 9039463 ~ 9039769 (+) True G36988
TU49580 lncRNA downstream 519000 9230080 ~ 9230363 (+) True G36991
TU49578 lncRNA downstream 519384 9230464 ~ 9230954 (+) True G36990
TU49579 lncRNA downstream 519384 9230464 ~ 9230923 (+) False G36990
XM_039796425.1 mRNA upstream 214350 8483190 ~ 8496659 (+) True gata2a
XM_039799038.1 mRNA downstream 80660 8791740 ~ 8798039 (+) False uba3
XM_039799039.1 mRNA downstream 80693 8791773 ~ 8798039 (+) True uba3
XM_039799036.1 mRNA downstream 80707 8791787 ~ 8798039 (+) False uba3
XM_039799035.1 mRNA downstream 80800 8791880 ~ 8798039 (+) False uba3
XM_039799037.1 mRNA downstream 81008 8792088 ~ 8798039 (+) False uba3
unassigned_transcript_186 other upstream 68908 8642030 ~ 8642101 (+) True trnae-cuc_5
unassigned_transcript_183 other upstream 93940 8616998 ~ 8617069 (+) True trnae-cuc_4
TU49260 other upstream 482289 8227762 ~ 8228720 (+) True G36744
TU48863 other upstream 1452059 7242209 ~ 7258950 (+) False G36458
TU48651 other upstream 2072622 6635302 ~ 6638387 (+) False setmar
unassigned_transcript_190 other downstream 27887 8738967 ~ 8739038 (+) True trnae-cuc_7
unassigned_transcript_191 other downstream 30626 8741706 ~ 8741777 (+) True trnae-cuc_8
unassigned_transcript_192 other downstream 96536 8807616 ~ 8807688 (+) True trnar-acg_13
unassigned_transcript_195 other downstream 105245 8816325 ~ 8816397 (+) True trnar-acg_14
unassigned_transcript_197 other downstream 111157 8822237 ~ 8822308 (+) True trnae-cuc_12