RNA id: TU61494


Basic Information

Item Value
RNA id TU61494
length 1235
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G45931
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 225945 ~ 229546 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tacatatgaaaaaacaagTTTATTTATTGTTAGCAACCCAAACGCATTTTCTTAGGGCGTTAATGTtacacagtatataatggaATCAATTGAATGTAATATCTTTGGTTGTGTCCTCAGTTGGAGATCAAACTATAATCCAACATGTGTCCCAGGAAACTGTCAGACTAGCCTGAAGGGaaaatgacacaaaacacaaaaaggatTAGTTATAAATAACTAGTAATTTAGTGTGACTTGTATTTATGCATATGTTGTGTCATGCAGTGTTCATTACATCCCACAATGAGAGACAGTACCAACAGAGCTGTAGTCAGGAAGTGGTTaccctagcttagcataaaggctGGAGGCAGGggtaaacagctagcctgccgctttgcaaaataaaaaaatacacctaCCAACACCTCTAAAACCTAATGATGAATGTGCAGAAATTGTATAATGGCAATTTATGGTTTTAGGGGGAGTAACATGATGAGAACAACTTGTTAACTAAAAACAAGAGGATATTTAAAATTGATGGTGAGGTAAGGTCAGGACTTCACCGCAGTGCCACACAAaatcatcctctggggaccatgaataacCAGAGTTCTATGATTGCATGTATAGTCAAAATTCATGTTGTCTCTTCCAATGACCACCAAACCAGCACAAGCTTTTGACCACTATGCTTCAGTATATTTGATCAAAATCCTAATTGGATTTCCTTCTGCCATCTTCAGCTGCAGTCTTACCTCTTCCACTGTTGCATCCCAGACCGCTGGCATTTCCTATTCGATCCATCCTGGCTCCAAAGCAGCCAGAGGCCCGTTTCCTGGCTGTCATCAGGAGGTCCAGCAGACGGCTCCTTTGACTTGCGGTCCTGCTGTGGCCCTCAGCTGGTAATTGAGATCTTTCTGACATTAAAGGTTCTTGGTCCCCCTCCTGGTCTTGGTTCCAACCCTGGCTGGCCTGGCTGTTCTCAGGCTGTTGATTTGTCCCTTCATAATCAGCTTCAGCGTCCTCCTCCTGGGCTGCATCAGCAAGAGTCTCCTCAAAGCGCTCCAGTATACTTGAGCTGAGCCAGGTCCCTAGTTGAAGAGGTCCTACCCAGTATGTGGCTGCTAACCAGTGTGTGCTGACACAGCAGGGCCAGCAGGCCCCACAGGACCGCAGTCCTCATGTTATCCTTTTGCTGCGAATACTGATACTACAGGCTGCACTGCAAGATTTTATATacatgccaa

Function

GO:

id name namespace
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61507 lncRNA upstream 2714 222544 ~ 223231 (+) True G45943
TU61593 lncRNA downstream 93697 323243 ~ 330408 (+) True G46011
TU61598 lncRNA downstream 102697 332243 ~ 340678 (+) True G46013
TU61601 lncRNA downstream 129276 358822 ~ 365267 (+) True G46014
XR_005639373.1 lncRNA downstream 145550 375096 ~ 376473 (+) True LOC120559841
TU61632 lncRNA downstream 271803 501349 ~ 501559 (+) True G46042
XM_039801939.1 mRNA upstream 16208 74750 ~ 209737 (+) False vps13d
XM_039801400.1 mRNA downstream 246918 476464 ~ 485895 (+) False commd7
XM_039801399.1 mRNA downstream 246920 476466 ~ 485895 (+) True commd7
XM_039799257.1 mRNA downstream 328671 558217 ~ 771056 (+) True LOC120558328
XM_039799258.1 mRNA downstream 328671 558217 ~ 771056 (+) False LOC120558328
XM_039799259.1 mRNA downstream 328671 558217 ~ 771056 (+) False LOC120558328
TU61671 other downstream 564356 793902 ~ 900296 (+) True G46066
TU61880 other downstream 1006769 1236315 ~ 1245218 (+) True LOC120559832
TU61892 other downstream 1047742 1277288 ~ 1284379 (+) True G46238
TU61894 other downstream 1047742 1277288 ~ 1282739 (+) False G46238
TU62008 other downstream 1293139 1522685 ~ 1523231 (+) True G46305

Expression Profile