RNA id: TU61789


Basic Information

Item Value
RNA id TU61789
length 1185
lncRNA type read_through
GC content 0.43
exon number 2
gene id G46160
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 995374 ~ 1054320 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtgtctgtgtgtgtgagtgtgtgtgtgtgtgtgtgggggggttacAGCTTATTCTTTCTGTGAAGATATATTGTGAGACTTTAAAGTGGTTATATATTACATACAAGCTACATGTTTACAGTTATGACGGAATAGAGATGGGGAAACACTGTCTGCAACCGGGACACAAGCTGGACAGAAGGGAGGGGGGTCATGCGGCTTTCTCGCTTCAGTATAGTGTAGGAATTCATCCCATGACTAATATATAAACAGCTGTATCGGGGCCAAGTCGATTAACATTTGAGcgttcagaaaaaaaaagtttctcagTTGAACCACTTGGACGTCACCACGCAACCATTCACGAGTTGGAAACTGGTGATTACAGTTTCTCCAACGTGACCTGAACGCAGCATATTCACAGTTCAAGGTTAATAGAAAAGGTCTGCAGAGCAAATATGGTCTCGAGCACAAAAACGGAGACTTAATTAACCATGACATTCCCAAAAGTCCAGTCCTAGTCCCAGTTCCAGGTAGCGTTGCCCATGTGCGCTGCCTGAGGACGTTGCTCATACGTTAGTGTTCACAGTGTACCGACTCAGTAGGTATTCTTAACATTCTCTGCTAGAGATGCACAACACACAGCTGTATACATCATCTACTTTAATATTATGCCAAATCGGGacctttgtgtttatttttcaccattttgttAGCAAAAGCAATACAAATCAAGCTGCTGTTGTCTTTATTTACAATATACTACACATGTATGTAGAATAGAACAGATTTGTGATTCTAGAGGTGATATTTGATATCTTGTAGCAGTCGGCTGTATCAGTGCATCTCTGTGCAGACAGCTGTTATAGCACCCTGtagcacaaaaacaaacagtaatATTGCAACGacaaactgtaaaatataaaatatacatttttctgaaaatagaaaataaatattaatatatatattttaaattagctACAGTAACATGAGGCCCACCACCAGTAATTTGTAGTTGGGGAATGTGAGgataagactgtgtgtgtgtttggtttacATGTGCGGGCAGCCCTGCGTGCCCACGGCTCCGTGCACAGCGAGGGGTTTGGATAACAGGGCAGGTCTGCGGTTGATGGACGCCTGGCGGATGCAGCCGTGGAAGACTGGCAGGCCGCCAGCTAGACCAGGAACTGGGACCC

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61776 lncRNA upstream 33571 920244 ~ 961803 (+) False G46156
TU61777 lncRNA upstream 67780 920244 ~ 927594 (+) True G46156
TU61772 lncRNA upstream 77040 918092 ~ 918334 (+) True G46154
TU61748 lncRNA upstream 88246 903558 ~ 907128 (+) True G46134
TU61747 lncRNA upstream 91904 902816 ~ 903470 (+) True G46133
TU61877 lncRNA downstream 144690 1199010 ~ 1199211 (+) True G46227
XR_005639370.1 lncRNA downstream 190520 1244840 ~ 1247771 (+) False LOC120559832
TU61887 lncRNA downstream 193182 1247502 ~ 1247736 (+) False LOC120559832
TU61893 lncRNA downstream 222968 1277288 ~ 1283232 (+) False G46238
TU61920 lncRNA downstream 262280 1316600 ~ 1317598 (+) True G46249
XM_039800007.1 mRNA upstream 9103 938976 ~ 986271 (+) False LOC120558777
XM_039800006.1 mRNA upstream 18164 938976 ~ 977210 (+) True LOC120558777
XM_039800008.1 mRNA upstream 18164 954919 ~ 977210 (+) False LOC120558777
XM_039801953.1 mRNA upstream 147752 825255 ~ 847622 (+) True ptk6b
XM_039801954.1 mRNA upstream 147752 825255 ~ 847622 (+) False ptk6b
XM_039799490.1 mRNA downstream 513975 1568295 ~ 1608445 (+) True LOC120558473
XM_039801109.1 mRNA downstream 1156856 2211176 ~ 2232622 (+) False LOC120559409
XM_039801110.1 mRNA downstream 1156856 2211176 ~ 2232622 (+) False LOC120559409
XM_039801108.1 mRNA downstream 1156856 2211176 ~ 2232329 (+) False LOC120559409
XM_039799519.1 mRNA downstream 1283016 2337336 ~ 2339429 (+) True LOC120558501
TU61671 other upstream 95078 793902 ~ 900296 (+) True G46066
TU61880 other downstream 181995 1236315 ~ 1245218 (+) True LOC120559832
TU61892 other downstream 222968 1277288 ~ 1284379 (+) True G46238
TU61894 other downstream 222968 1277288 ~ 1282739 (+) False G46238
TU62008 other downstream 468365 1522685 ~ 1523231 (+) True G46305
TU62038 other downstream 581628 1635948 ~ 1638170 (+) True G46328

Expression Profile