RNA id: TCONS_00075301


Basic Information

Item Value
RNA id TCONS_00075301
length 1209
lncRNA type inter_gene
GC content 0.46
exon number 5
gene id XLOC_037675
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 11822379 ~ 11855305 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGCTTTCTTGTTGTTCCTATAGTTtgttaataaatatgaaaaattctGATAGTACCTGttacgtgtgtgtttgtgACACCAAAGAAAATTTTGACCTAGTCCAGCACTCTACAGAAAGCTTGAAGTATCTGATTAAACTACAGTCTATTGCCTTCTCTCACTCCTGCAACCAGCTGGTGGAACCATAGTGTGGTTCATCTCAAACAAGCCCAAGGTCTTCAGACTTACTAAAAACTTCAAGGTTATTTGACTTTgttcaacccagactcattggagatatgtgcccagggcttcATTTTTGAGAACAGAGAAACATGTACCCTaaagcagggattctcaaccagtCAGCTGTGGCCCCCTAGTGGCCTCATTGATCCTGCAGATGTTTGGAGAAATTGATGCCCTACCTGGGGGTCTGCATTAACGAGACTCTCCTAATGAATGGGAGGACACTAAAAGGCATCTTCTTTCCATCCATGTATCAACTCCAAGACAGGCAGGAAAGTCTCTTCCATGTCAATATCCTCTTGGCCTCACCTGTCCACGCGAATCCTCCCAAAGTAATCTAAGCATCAAGCACATCCACTTTCCTTCAAACTGATGTGATCGGGGCGATGCGCCGAGGATGCGGGGCGACCCAGGTGACCTTGTTCCATATTCAATTTCATCGGCCCTGCGTTCCCATGGACAGGTCCTCCGCCAGCTGCTCTCCCCGTCGCACAGTTCCTTGTGCAACAGCGAGAACATCAGTCTGGGGACGACTTCAAGAGCCCTTATTGATGGTGTTGTCAAGGCGAGGGCGAGAGCAACTTAATCTCTCTCAATTAATACCCCCGCCTGCGGCCACCACGTCCCAGTGCTCAGTAGCCCTTTTCCCCCACACAGGCCCCTGAGCGCCTTGCTGACACTCACCTTTCTACTCCTAATGAGTCCCTCTCCGATTTGCTGCCATTGCTCCAGGCCTAAAAATTACCCTAAATCCCAACACATCCTTGACTCTGTGCATGTCCACCCTGTGTGAAGATAAGGAGGAATATCCTTTTTAATGTCTGTTGTGGACCCTTTTTAGATTGTAATGATGTAATAACAGTGTGCTACATTGGTGATGAATTAAAGCTCATGTGAAATTTCCTGTTTTAGTTGAAAATACATCCacatgctgaaataaaagtctcagcaacttcttcAACCTCATGCTGACTTTAAAG

Function

GO:

id name namespace
GO:0005669 transcription factor TFIID complex cellular_component
GO:0016251 RNA polymerase II general transcription initiation factor activity molecular_function
GO:0140223 general transcription initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073976 lncRNA downstream 167348 11645229 ~ 11655031 (-) True XLOC_037673
TCONS_00075300 lncRNA downstream 223435 11595987 ~ 11598944 (-) False XLOC_037673
TCONS_00075299 lncRNA downstream 250025 11571312 ~ 11572354 (-) False XLOC_037671
TCONS_00075298 lncRNA downstream 250130 11571312 ~ 11572249 (-) False XLOC_037671
TCONS_00073972 lncRNA downstream 262040 11557206 ~ 11560339 (-) True XLOC_037670
TCONS_00075302 lncRNA upstream 221550 12076843 ~ 12171775 (-) False XLOC_037677
TCONS_00075303 lncRNA upstream 221550 12076843 ~ 12171782 (-) False XLOC_037677
TCONS_00074963 lncRNA upstream 287776 12143069 ~ 12171769 (-) False XLOC_037677
TCONS_00075304 lncRNA upstream 308644 12163937 ~ 12171785 (-) True XLOC_037677
TCONS_00075305 lncRNA upstream 496859 12352152 ~ 12401798 (-) True XLOC_037678
TCONS_00073977 mRNA downstream 145888 11664797 ~ 11676491 (-) True XLOC_037674
TCONS_00073975 mRNA downstream 167348 11597500 ~ 11655031 (-) False XLOC_037673
TCONS_00073974 mRNA downstream 235309 11576502 ~ 11587070 (-) True XLOC_037672
TCONS_00073970 mRNA downstream 261947 11554405 ~ 11560432 (-) False XLOC_037670
TCONS_00073969 mRNA downstream 261952 11554359 ~ 11560427 (-) False XLOC_037670
TCONS_00073980 mRNA upstream 51477 11906770 ~ 12034444 (-) True XLOC_037676
TCONS_00073981 mRNA upstream 404176 12259469 ~ 12269966 (-) False XLOC_037678
TCONS_00073982 mRNA upstream 406023 12261316 ~ 12401871 (-) False XLOC_037678
TCONS_00073983 mRNA upstream 407409 12262702 ~ 12269980 (-) False XLOC_037678
TCONS_00073984 mRNA upstream 410256 12265549 ~ 12269847 (-) False XLOC_037678
TCONS_00073973 other downstream 250324 11571973 ~ 11572055 (-) True XLOC_037671
TCONS_00073967 other downstream 270675 11551604 ~ 11551704 (-) True XLOC_037669
TCONS_00073965 other downstream 271982 11548772 ~ 11550397 (-) False XLOC_037669
TCONS_00073961 other downstream 975830 10845918 ~ 10846549 (-) True XLOC_037667
TCONS_00073936 other downstream 2017060 9770335 ~ 9805319 (-) True XLOC_037657
TCONS_00073998 other upstream 726973 12582266 ~ 12594717 (-) False XLOC_037682
TCONS_00073999 other upstream 729350 12584643 ~ 12594723 (-) False XLOC_037682
TCONS_00074000 other upstream 729610 12584903 ~ 12594705 (-) False XLOC_037682
TCONS_00074018 other upstream 1030459 12885752 ~ 12887858 (-) True XLOC_037687
TCONS_00074026 other upstream 1984449 13839742 ~ 13853399 (-) True XLOC_037696

Expression Profile

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