RNA id: TU61877


Basic Information

Item Value
RNA id TU61877
length 202
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G46227
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 1199010 ~ 1199211 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGGTTGGTGGTAAATGGTAGTAATAAGCTTAATTAGCAGTCAACACTTAAAACTAAAGGAACTACAGGTTAAGCCTTTCACCTGCTCCTTGAATCAACTTGTTCACAGTTAATTTTCCTTTGTCACCACAAAGGAATTGAGCCCTGGTAGCAATCTGTTTGCTAGAGGTAAAATGAGTTGCTTCGAGTACCAGAGGCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61789 lncRNA upstream 144690 995374 ~ 1054320 (+) True G46160
TU61790 lncRNA upstream 144690 1046546 ~ 1054320 (+) False G46160
TU61776 lncRNA upstream 237207 920244 ~ 961803 (+) False G46156
TU61777 lncRNA upstream 271416 920244 ~ 927594 (+) True G46156
TU61772 lncRNA upstream 280676 918092 ~ 918334 (+) True G46154
XR_005639370.1 lncRNA downstream 45629 1244840 ~ 1247771 (+) False LOC120559832
TU61887 lncRNA downstream 48291 1247502 ~ 1247736 (+) False LOC120559832
TU61893 lncRNA downstream 78077 1277288 ~ 1283232 (+) False G46238
TU61920 lncRNA downstream 117389 1316600 ~ 1317598 (+) True G46249
TU61923 lncRNA downstream 135265 1334476 ~ 1334791 (+) True G46252
XM_039799642.1 mRNA upstream 146000 1048972 ~ 1053010 (+) True adrm1
XM_039799637.1 mRNA upstream 153771 1015388 ~ 1045239 (+) False LOC120558589
XM_039799636.1 mRNA upstream 153771 1015389 ~ 1045239 (+) True LOC120558589
XM_039800004.1 mRNA upstream 188173 984169 ~ 1010837 (+) True trim101
XM_039800005.1 mRNA upstream 188173 984169 ~ 1010837 (+) False trim101
XM_039799490.1 mRNA downstream 369084 1568295 ~ 1608445 (+) True LOC120558473
XM_039801109.1 mRNA downstream 1011965 2211176 ~ 2232622 (+) False LOC120559409
XM_039801110.1 mRNA downstream 1011965 2211176 ~ 2232622 (+) False LOC120559409
XM_039801108.1 mRNA downstream 1011965 2211176 ~ 2232329 (+) False LOC120559409
XM_039799519.1 mRNA downstream 1138125 2337336 ~ 2339429 (+) True LOC120558501
TU61671 other upstream 298714 793902 ~ 900296 (+) True G46066
TU61880 other downstream 37104 1236315 ~ 1245218 (+) True LOC120559832
TU61892 other downstream 78077 1277288 ~ 1284379 (+) True G46238
TU61894 other downstream 78077 1277288 ~ 1282739 (+) False G46238
TU62008 other downstream 323474 1522685 ~ 1523231 (+) True G46305
TU62038 other downstream 436737 1635948 ~ 1638170 (+) True G46328

Expression Profile