RNA id: TU61933


Basic Information

Item Value
RNA id TU61933
length 2184
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G46258
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 1365120 ~ 1367303 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tctctttatttatttaaacagggacaatgtacaatatacattaacctTAGACAGGACAGATGCATTataccaggttgtagcacaTGTGCtagtttccacctgtagtccctgggcaggctgATGTcaacaaataaatgtaataatacatttatcccaaaaccaacattaaaatgatCACACCCTTCATTCATTCCTCAGCATTCATTTACAAATACGCTCCCAAATACACATCAATTTCTATACATTATGTGAACATGAACATGGCCCGATATGAAAAAATTTTATCAGCTCTGTTGGCAACTTATTCCCCTGTCTGATAGCCACACTTGAGAAAGCTGAGCTGCCGAAAGCTCTTTACACTGAGGAATCCTACACTCGCCCCGAACAGTCGACCGAAGTGCTTTTTAAGAATGTGACAGTGATGAAATAGCCGAGATTTCTTGTCATGAACCTTAAGAGAACTTTTGTACAATGATTCCAGGGGCCTAAATGCTGTTTTACATGCCTGTGACCAACTTGTCATGCAATAACGAAAGTGCGGAATAATCATCGCATTGAGATATAAATTAGATGCATCTATGGTCAAAGAGTTCCTAATATATCTAAAATGTGCTATGTTAATTTTCAACGTGTTGGctatctttttaatgttttttgaaatttaaatttgGGTCAAGAATGATATCTGCCTTGAGTTAAATGCTTCAaacataacacttgacatattgttttatcatacagctgacatatacttacaataaaacacataaacaaagtgatatgcagccagactgaagcacattgtcagccacaatctattgctcatctttcacaaacagtgaaaaGACCTACACACAATCATATATGCATTATATCATGAAGTTATTCCACAACCAGCTttaagcaacattatttaaagttttaattgaggtaggtccaaattaggcctatagtttagaaatatttagtttacattagGGTGCCAGCAGAGGATAAGagctacttggcatggagaataaagatcagaccatattctctgtgcttgtctggagagactggtttctattcctctccaTAACCTTCATAACAGTCACCTGACAACCAAACTTTATatgagatgtttttagatattgTCATGCTTTCTGACATGAATATGTTCtataatgcagccttgtataacataaaccctATGATTCActgtgtctgctctaaatgataacacccactttcaacacgggccttccagccaaaggtgttgtccatatgaacaccaagGTGCCTTTAGAGCAGAGCCGAtggattggttcatcatttatgacctctgataccctctgacccatgtcacaACCAACTCCtcagtttgtgaaaaaaatgacaaaacacatgttgtatatgtacacatacccaaacaaagctatatacatctctGTGAAAAAAAACCTCAGCAACAATCTGCTTATCTTTTTGATTTCCtgaaatgcttcctaaaactagtcccttcttCATTTTGATGGCTAtatggctacaagctgtaaccacggtgattgatatgaggatcatcttctgaatataataattaatatgttaggcctaccataaattgatatttcaaaaaagtcagttatttgctcattttgtttctctgttctgCGCACCATCCAATATTGCCAGGTTTATATTGTGGAAtctgttctgtatgtctgaataataaatggtgctaataaaaaattgaacttaaaaaaaaagtaatttatttaaaacaactaataatgcagtgtgatgttaaatcaaactaagtcccacacatacatatgctcatgttttttccctttttcccatcaactgcaaaattagaaaattgcatttttaaaggggtgatagaatgattatatagggtattttacactgttccttaaggtctcctaatggggtatgtaacattggttgggctgaaaattgcccgaatgatattttattaggcacttaactaccctgtgaatatggctctatttggaacaagagcttttcttccaaatatggtatgctcattaatattcagaatgagctacgcgctgattggtttgagcaaactacatagaaacacatgggagactcatatttcagacactgcaaagttatacattgtttatcgggctatttcgttattaaaatCACTTCTGAatc

Function

GO: NA

KEGG:

id description
ko00350 Tyrosine metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639119.1 lncRNA upstream 12990 1351730 ~ 1352130 (+) True LOC120558411
TU61923 lncRNA upstream 30329 1334476 ~ 1334791 (+) True G46252
TU61920 lncRNA upstream 47522 1316600 ~ 1317598 (+) True G46249
TU61893 lncRNA upstream 81888 1277288 ~ 1283232 (+) False G46238
XR_005639370.1 lncRNA upstream 117349 1244840 ~ 1247771 (+) False LOC120559832
TU61935 lncRNA downstream 334 1367637 ~ 1368791 (+) True G46259
TU61951 lncRNA downstream 104610 1471913 ~ 1472145 (+) True G46273
TU61952 lncRNA downstream 104853 1472156 ~ 1472382 (+) True G46274
XR_005639271.1 lncRNA downstream 132201 1499504 ~ 1521327 (+) True LOC120559430
XR_005639255.1 lncRNA downstream 182867 1550170 ~ 1551968 (+) False LOC120559421
XM_039799642.1 mRNA upstream 312110 1048972 ~ 1053010 (+) True adrm1
XM_039799637.1 mRNA upstream 319881 1015388 ~ 1045239 (+) False LOC120558589
XM_039799636.1 mRNA upstream 319881 1015389 ~ 1045239 (+) True LOC120558589
XM_039800004.1 mRNA upstream 354283 984169 ~ 1010837 (+) True trim101
XM_039799490.1 mRNA downstream 200992 1568295 ~ 1608445 (+) True LOC120558473
XM_039801109.1 mRNA downstream 843873 2211176 ~ 2232622 (+) False LOC120559409
XM_039801110.1 mRNA downstream 843873 2211176 ~ 2232622 (+) False LOC120559409
XM_039801108.1 mRNA downstream 843873 2211176 ~ 2232329 (+) False LOC120559409
XM_039799519.1 mRNA downstream 970033 2337336 ~ 2339429 (+) True LOC120558501
TU61892 other upstream 80741 1277288 ~ 1284379 (+) True G46238
TU61894 other upstream 82381 1277288 ~ 1282739 (+) False G46238
TU61880 other upstream 119902 1236315 ~ 1245218 (+) True LOC120559832
TU61671 other upstream 464824 793902 ~ 900296 (+) True G46066
TU62008 other downstream 155382 1522685 ~ 1523231 (+) True G46305
TU62038 other downstream 268645 1635948 ~ 1638170 (+) True G46328
TU62302 other downstream 1022643 2389946 ~ 2390512 (+) True G46530
TU62381 other downstream 1378595 2745898 ~ 2770453 (+) True G46574
XR_005639249.1 other downstream 1912058 3279361 ~ 3283170 (+) False LOC120559414

Expression Profile