RNA id: TU62386


Basic Information

Item Value
RNA id TU62386
length 1648
lncRNA type read_through
GC content 0.40
exon number 3
gene id G46577
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 2663906 ~ 2861822 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

taaaaatgccagaattagccaaaagctcGCAAACTTCCCCCCTGAATACAACCAGCTGTTCTCATGTCTCAAATCCACTGAAGAAGCCTGTGGGATACCATAGATATATGTATAGGTGTATACGTAGATACCACATTGGCCGCTTCCTAAAGAACATTACGCTCCTCctaatgcatgtgtgtctatggaGGCAGAAGGTCTAGCCACAATTAAAGAAACTGTTCAGtaacacacataacaaacaTCATTTTCAGCATCTTACTGAGGTATTACTAATTACTGAAATAACAATACTTTACCTgacacaagctagcattagcttaacTCAGTATCaggacagtcacttaactcattgTTAGTTTAAAAGAAGGATTCATTTTACCTTTTGTGATATTAAACTCAACGCTTTCGTAATAGTATCAtattgtaaaacacatttttcatctgtgaaatgttattccatgttgctttgtttaacatttcttttacataaaCATCCAAAAGCAGCACAAAATCTTTTTCTACGAGTCTTTAAGATCAGTTGTTCGTCCCAAGATGGCGGCAGCACAGACACAGTTTCAACACATTAACTGATCAAGTCGCTttttaagcagcagcagcagcagacatgtTCTGATTAAAGCTTCCCAGTTATGAAGATTTGCTTCTTTTCTTCGTCTTAAGGGACAATAGGCTAAATACTTCTGCAATTTGACATTACCTTAGTAAACAGTGATGGGATTTTTTCAATTAAGAACAAATACTCTGTTGCAGCATTAGTTAAATAGCACTAGCAGTTGAACCCTGAACTCAAAATATTTCATTACAGAAATAACAGCTAATTTTGAGTGAAATTAATCCCTTCAAAAAGGGAGGGAGTGTTTTATGTGGTCGTAGCCAGGATAACATGCATGCTGTTCAGAAGATAAAGTTACTActggtcagccttcaatgtggagagaagatcagaatataacaacacagctatcagggcatgaggaggaggcaggaggaaacagcttggctctgaaacatgttcactacgaggcagtgtgaatgcgctggtgtcttttaaggttactactctgagaaaacattttaccacattgttcacacctgtacggcttctctccagtgtgaatgcgctggtgttTTTTAAGGTCACTACTCTCAGAAaacgttttcccacattgttcacaccagtacggcttctctccagtgtgaacacgtcggtgGCTTTCTAGGCTACCACTCCTAGAAAAGGATTCAACACATaaatcacagctgtaaggtttatctccagtgtgaatgcgttgatggctTTTTAGGTGTCcctgttgtgtgaaagctgccccacattgatcacagctgtaaggcttttctccagtgtgaatgcgttgatggctTTTTAGgtgtccctgttgtgtgaaagctgccccacattgatcacagctgtacggcttctctccagtgtgaatgcgttggtgGATTTTAAGGTTACTCTGTAGTGTGAAAGCTGCctcacattgatcacagctgtgtagattctctccagtgtgaactctctgatgaatctttaaatatttTGATGTTGTGAAGGATTTGTTACAGTGCTGACAGTGGTGACATTTGGgtccctcttctcctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639264.1 lncRNA upstream 18152 2637964 ~ 2645754 (+) False LOC120559425
XR_005639265.1 lncRNA upstream 18152 2637971 ~ 2645754 (+) False LOC120559425
TU62363 lncRNA upstream 23372 2638171 ~ 2640534 (+) True LOC120559425
TU62365 lncRNA upstream 24960 2638171 ~ 2638946 (+) False LOC120559425
TU62369 lncRNA upstream 59651 2603198 ~ 2604255 (+) True G46564
XR_005639273.1 lncRNA downstream 17340 2879162 ~ 2879742 (+) True LOC120559432
XR_005639250.1 lncRNA downstream 113032 2974854 ~ 2975570 (+) True LOC120559417
XR_005639261.1 lncRNA downstream 114794 2976616 ~ 2977694 (+) True LOC120559422
XR_005639283.1 lncRNA downstream 156989 3018811 ~ 3035935 (+) True LOC120559441
TU62346 lncRNA downstream 179651 3041473 ~ 3109786 (+) False G46555
XM_039801113.1 mRNA upstream 1564 2661572 ~ 2662342 (+) True LOC120559413
XM_039799556.1 mRNA upstream 16439 2645892 ~ 2647467 (+) True LOC120558523
XM_039799553.1 mRNA upstream 113182 2548939 ~ 2550724 (+) True LOC120558519
XM_039801074.1 mRNA upstream 243048 2413571 ~ 2420858 (+) False LOC120559387
XM_039801073.1 mRNA upstream 243053 2413571 ~ 2420853 (+) True LOC120559387
XM_039801086.1 mRNA downstream 284659 3146481 ~ 3166448 (+) True LOC120559392
XM_039801077.1 mRNA downstream 316475 3178297 ~ 3185180 (+) True LOC120559389
XM_039801078.1 mRNA downstream 316475 3178297 ~ 3185180 (+) False LOC120559389
XM_039801114.1 mRNA downstream 417542 3279364 ~ 3304637 (+) True LOC120559414
XM_039801104.1 mRNA downstream 638500 3500322 ~ 3513600 (+) False LOC120559404
TU62302 other upstream 273394 2389946 ~ 2390512 (+) True G46530
TU62038 other upstream 1025736 1635948 ~ 1638170 (+) True G46328
TU62008 other upstream 1140675 1522685 ~ 1523231 (+) True G46305
TU61892 other upstream 1379527 1277288 ~ 1284379 (+) True G46238
XR_005639249.1 other downstream 417539 3279361 ~ 3283170 (+) False LOC120559414
XR_005639245.1 other downstream 643486 3505308 ~ 3512484 (+) False LOC120559404
TU63394 other downstream 3337224 6199046 ~ 6200594 (+) True G47444
TU63466 other downstream 3836189 6698011 ~ 6705887 (+) False ccm2l
TU63965 other downstream 5250619 8112441 ~ 8116228 (+) True G47903

Expression Profile