RNA id: TU63335


Basic Information

Item Value
RNA id TU63335
length 835
lncRNA type inter_gene
GC content 0.47
exon number 4
gene id G47388
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 5533001 ~ 5534512 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcctgctctcagctttgaaccttctcctcgcactcagccTGATTCTGCGCGCTTGCAAATCTGCTGCTCTCGGAtctctcctgcgcgcttggatttttctgtgttacAACACTATCAAAATTccacaaccaatagaatgccaggtgtagtgttgaccaattaAATGATCCCtgccccgttgagggtgcgttcgtTTTATGTGAGAACATCCGTTGCGGCCGGCTCCTCTGTAACCATGGGTCTGTAACCCAAGTTTATTTAACCCCGCCGTCCATCGCTTTATTATTAGTATATGTCaataatgtgcacagaatggtcgacggtctttcacctgcacccatcaggaaacgggagaaagctttgaagtgggacataTCAAGTtacgtagctagctacacaactatgagggtggggctgaagTACCCATGTTGAGCTGCACTGTGTGCATGGACCAGTGTTGTACAAACACACTATTGTGTTGTTCCAGTCAGTACATTACTCCAAACGCAAAATCCCATTGGTTCCCCCtgtactcacctgtgtgcagagggcaGGCAGTAGTGGCACAAACCAAGGTGCACAACAAGGCCCAGGAGAGACAATTACTGTGATGTCCACAAATCCAGAGAAGagaagGAGCACACTATACAAAGTCAACAGTGGAGAGTTGATGGATccgtctgtcctcaaagtgccagagatctacaaggacttcacccgtTTCTGCACCATCACCTCCATAATccaagtgataaaagagagaacaaactaTTGTGTTCTCTGCttacatgaataggtgcctgtaatgtctgcccacataaacaatcaataaatg

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63332 lncRNA upstream 9026 5523070 ~ 5523975 (+) True G47385
TU63311 lncRNA upstream 176890 5355635 ~ 5356111 (+) True G47369
TU63256 lncRNA upstream 546222 4986281 ~ 4986779 (+) True G47314
TU63252 lncRNA upstream 563702 4968929 ~ 4969299 (+) True G47310
TU63242 lncRNA upstream 612171 4904149 ~ 4920830 (+) True G47307
TU63340 lncRNA downstream 63800 5598312 ~ 5598572 (+) True G47393
TU63361 lncRNA downstream 200992 5735504 ~ 5735733 (+) True G47414
TU63369 lncRNA downstream 217206 5751718 ~ 5752149 (+) True G47421
TU63371 lncRNA downstream 227357 5761869 ~ 5762081 (+) True G47423
TU63376 lncRNA downstream 322053 5856565 ~ 5856998 (+) True G47428
XM_039799230.1 mRNA upstream 145741 5376303 ~ 5387260 (+) False LOC120558307
XM_039799469.1 mRNA downstream 212697 5747209 ~ 5750232 (+) True npbwr2b
XM_039800990.1 mRNA downstream 529338 6063850 ~ 6234843 (+) True oprl1
XM_039800991.1 mRNA downstream 529338 6063850 ~ 6234843 (+) False oprl1
XM_039801594.1 mRNA downstream 727511 6262023 ~ 6272680 (+) True LOC120559680
XM_039801478.1 mRNA downstream 811596 6346108 ~ 6393502 (+) True rgs19
XR_005639245.1 other upstream 2020517 3505308 ~ 3512484 (+) False LOC120559404
XR_005639249.1 other upstream 2249831 3279361 ~ 3283170 (+) False LOC120559414
TU62381 other upstream 2762548 2745898 ~ 2770453 (+) True G46574
TU62302 other upstream 3142489 2389946 ~ 2390512 (+) True G46530
TU62038 other upstream 3894831 1635948 ~ 1638170 (+) True G46328
TU63394 other downstream 664534 6199046 ~ 6200594 (+) True G47444
TU63466 other downstream 1163499 6698011 ~ 6705887 (+) False ccm2l
TU63965 other downstream 2577929 8112441 ~ 8116228 (+) True G47903
TU64119 other downstream 2808239 8342751 ~ 8380392 (+) False pkig
TU64120 other downstream 2808406 8342918 ~ 8380578 (+) False pkig

Expression Profile