RNA id: TCONS_00073999


Basic Information

Item Value
RNA id TCONS_00073999
length 793
RNA type processed_transcript
GC content 0.47
exon number 5
gene id XLOC_037682
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 12579077 ~ 12595003 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTACAGACGTCTggtttgtgtgtgcgtttgagCACTACTTGTGTGTTGTCCTAATCATTTCTCTTGCATTGTAATTATTGCAGCATAttacaaactaaacaaaaatgagTGACGCCGAGAAGGAATTCGTGGAGCGGgTTAAGGTTGGAAGAAGAGAAATCTGGATGAAGTCAAATGTCAAGTTGTTAATGCGAATAATTTGAAGCTGAATTTTCAGTGCATGCTAATATTGCGGAGCAAAAGAAGTTCCCATATAGCATTTTTGGGCAGTGAGAGAAATGGGGGAAGAGGATTGAAGTCAGAAATGAAATTGAGActgaagaaagaagaaaagatgTGTTATGAAGTTAAGATCAGAAGTTATCTGGGATAAGATCGCAGCGCTAAGTAACTCTTAGAGTCTCGTTCAGCCTCTAGGAGCGCAAGTCCTAGAGGATCTGCCAAGTCCGGCAGTCGCTCAGCTGAACGCTCGCCTGCTCATTCCAAAGAGAGGTCCCATCATTCCCGCTCAAAATCCCGCTCGCGCTCCCGTTCCAAGACCAGGTCTCGTTCCCATCGAAGTTCTCGAAGACATTACAGTCGATCACGTTCACGCTCTTATTCTCGCCGAAGACGTTCACGCAGCCGCTCATACAGCAGTGAATATCACCGCCGCCGCAGCAGTCACAGTCACTCTCCCATGTCCAACCGCAGACGACATATTGGTGACCGGGCAAATCCAGACCCAAACTGCTGCCTGGGAGTGTTCGGATTGAGCCTGTACACCACAGAGAGAGACCTGAGGGAGGTCTT

Function

GO:

id name namespace
GO:0048026 positive regulation of mRNA splicing, via spliceosome biological_process
GO:0005681 spliceosomal complex cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1094 Predicted to enable RNA binding activity. Predicted to be involved in positive regulation of mRNA splicing, via spliceosome. Predicted to be part of spliceosomal complex. Is expressed in brain. Orthologous to human TRA2B (transformer 2 beta homolog).

Ensembl:

ensembl_id ENSDART00000146127

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075305 lncRNA downstream 182845 12352152 ~ 12401798 (-) True XLOC_037678
TCONS_00075304 lncRNA downstream 412858 12163937 ~ 12171785 (-) True XLOC_037677
TCONS_00075303 lncRNA downstream 412861 12076843 ~ 12171782 (-) False XLOC_037677
TCONS_00075302 lncRNA downstream 412868 12076843 ~ 12171775 (-) False XLOC_037677
TCONS_00074006 lncRNA upstream 60582 12655305 ~ 12656425 (-) True XLOC_037685
TCONS_00074010 lncRNA upstream 132463 12727186 ~ 12736053 (-) False XLOC_037686
TCONS_00075306 lncRNA upstream 295175 12889898 ~ 12902782 (-) False XLOC_037688
TCONS_00075307 lncRNA upstream 304445 12899168 ~ 12903013 (-) True XLOC_037688
TCONS_00075308 lncRNA upstream 350834 12945557 ~ 12948957 (-) True XLOC_037689
TCONS_00073993 mRNA downstream 8867 12469147 ~ 12575776 (-) False XLOC_037681
TCONS_00073995 mRNA downstream 8867 12476696 ~ 12575776 (-) True XLOC_037681
TCONS_00073991 mRNA downstream 9074 12468635 ~ 12575569 (-) False XLOC_037681
TCONS_00074002 mRNA upstream 1315 12596038 ~ 12625385 (-) False XLOC_037683
TCONS_00074003 mRNA upstream 3358 12598081 ~ 12624622 (-) True XLOC_037683
TCONS_00074004 mRNA upstream 53982 12648705 ~ 12652984 (-) True XLOC_037684
TCONS_00074005 mRNA upstream 60555 12655278 ~ 12659140 (-) False XLOC_037685
TCONS_00074007 mRNA upstream 69650 12664373 ~ 12682848 (-) False XLOC_037686
TCONS_00073978 other downstream 729338 11822379 ~ 11855305 (-) True XLOC_037675
TCONS_00073973 other downstream 1012588 11571973 ~ 11572055 (-) True XLOC_037671
TCONS_00073967 other downstream 1032939 11551604 ~ 11551704 (-) True XLOC_037669
TCONS_00073965 other downstream 1034246 11548772 ~ 11550397 (-) False XLOC_037669
TCONS_00073961 other downstream 1738094 10845918 ~ 10846549 (-) True XLOC_037667
TCONS_00074018 other upstream 291029 12885752 ~ 12887858 (-) True XLOC_037687
TCONS_00074026 other upstream 1245019 13839742 ~ 13853399 (-) True XLOC_037696
TCONS_00074033 other upstream 1498518 14093241 ~ 14108880 (-) True XLOC_037700
TCONS_00074049 other upstream 2975620 15570343 ~ 15572163 (-) True XLOC_037710
TCONS_00074050 other upstream 3091023 15685746 ~ 15689059 (-) True XLOC_037711

Expression Profile

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