RNA id: TCONS_00074006


Basic Information

Item Value
RNA id TCONS_00074006
length 846
lncRNA type retained_intron
GC content 0.32
exon number 3
gene id XLOC_037685
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 12655278 ~ 12659140 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtttaactctaggggactttTTTTCTGGCGTTTCTTTTCAGATGAGTCTATTAATTTCTGCTGTGGACTGTATAAAATTTTGCTGCTATGAATTGTTAAAAACCTGTTTACTAGAACATTGGAGCACATATAGCCTATATAGCCTATCGGAAACGaattaataaaaagtattttgtatttttgtgttatAATTTAGCAGGTCTAAAAGGAGTGAGGAGCGAATGGAGAATCAAGCTAGTCTGAGAAAGTTTCGTCATGAGGAGAGGAAAGCAGAGATGAAGCAGAGACATGATGAAATGCGATTGAAATATGGTTTGAAGAAGGATAACCAGTACTCCAGATTTGAGAACAGCTAGGCAGCTTGTGATGATGCTCAGCTGTTGTCTTCTATTTTAAACTCAACTCTTCAGCACTCCTTTTTTGAAGAGCAAATTTGATTCAGTCATACCTGTATATTTATCAAATCTATAAGCAAaccacaaaaatattttttgtatttattgaaGCCTTTAGATTGAAGGGTAATGATGACTTTTGCAAATCAAACTAAGCATCCACATAAATTGACAACATAAATGTAATACTACAGCAACACTGAAAGCTACCTTTATTTTCCTCAAACTAATAAGCTTAATTATTAAGGACTTCAATAGAAAACCATTTTGTTCAAAGATTTTCTCTTTTCACATTTTCATACATGCTTAAGTGAAATTGATTTAATACTACTTTTTTGGCATTTTGATATAATGTTGCATTGAATGTTTTAATCTCTAGCTTATCGCCAAAGACTTgatttgttttgtgatttgttttgtgCACCTTTCAAAGTCGAATAAActtgaaaaa

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0006606 protein import into nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-10 Acts upstream of or within hemopoiesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and nucleus. Is expressed in neural crest; pigment cell; pronephric duct; retina; and yolk syncytial layer. Orthologous to human PTTG1IP (PTTG1 interacting protein).

Ensembl:

ensembl_id ENSDART00000146721

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074001 lncRNA downstream 60528 12589956 ~ 12594777 (-) True XLOC_037682
TCONS_00075305 lncRNA downstream 253507 12352152 ~ 12401798 (-) True XLOC_037678
TCONS_00075304 lncRNA downstream 483520 12163937 ~ 12171785 (-) True XLOC_037677
TCONS_00075303 lncRNA downstream 483523 12076843 ~ 12171782 (-) False XLOC_037677
TCONS_00075302 lncRNA downstream 483530 12076843 ~ 12171775 (-) False XLOC_037677
TCONS_00074010 lncRNA upstream 70761 12727186 ~ 12736053 (-) False XLOC_037686
TCONS_00075306 lncRNA upstream 233473 12889898 ~ 12902782 (-) False XLOC_037688
TCONS_00075307 lncRNA upstream 242743 12899168 ~ 12903013 (-) True XLOC_037688
TCONS_00075308 lncRNA upstream 289132 12945557 ~ 12948957 (-) True XLOC_037689
TCONS_00075309 lncRNA upstream 298142 12954567 ~ 12956248 (-) True XLOC_037690
TCONS_00074004 mRNA downstream 2321 12648705 ~ 12652984 (-) True XLOC_037684
TCONS_00074002 mRNA downstream 29920 12596038 ~ 12625385 (-) False XLOC_037683
TCONS_00074003 mRNA downstream 30683 12598081 ~ 12624622 (-) True XLOC_037683
TCONS_00073997 mRNA downstream 60302 12579411 ~ 12595003 (-) False XLOC_037682
TCONS_00073996 mRNA downstream 60546 12579077 ~ 12594759 (-) False XLOC_037682
TCONS_00074007 mRNA upstream 7948 12664373 ~ 12682848 (-) False XLOC_037686
TCONS_00074008 mRNA upstream 7948 12664373 ~ 12736089 (-) False XLOC_037686
TCONS_00074009 mRNA upstream 55366 12711791 ~ 12760323 (-) False XLOC_037686
TCONS_00074011 mRNA upstream 96547 12752972 ~ 12811936 (-) True XLOC_037686
TCONS_00074012 mRNA upstream 177989 12834414 ~ 12870537 (-) False XLOC_037687
TCONS_00073999 other downstream 60582 12584643 ~ 12594723 (-) False XLOC_037682
TCONS_00073998 other downstream 60588 12582266 ~ 12594717 (-) False XLOC_037682
TCONS_00074000 other downstream 60600 12584903 ~ 12594705 (-) False XLOC_037682
TCONS_00073978 other downstream 800000 11822379 ~ 11855305 (-) True XLOC_037675
TCONS_00073973 other downstream 1083250 11571973 ~ 11572055 (-) True XLOC_037671
TCONS_00074018 other upstream 229327 12885752 ~ 12887858 (-) True XLOC_037687
TCONS_00074026 other upstream 1183317 13839742 ~ 13853399 (-) True XLOC_037696
TCONS_00074033 other upstream 1436816 14093241 ~ 14108880 (-) True XLOC_037700
TCONS_00074049 other upstream 2913918 15570343 ~ 15572163 (-) True XLOC_037710
TCONS_00074050 other upstream 3029321 15685746 ~ 15689059 (-) True XLOC_037711

Expression Profile

//