RNA id: TCONS_00074007


Basic Information

Item Value
RNA id TCONS_00074007
length 2751
RNA type mRNA
GC content 0.50
exon number 16
gene id XLOC_037686
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 12664373 ~ 12811936 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTATTGACAGTAATGATGAGAATGACGGATACGTGGACACGGATGAGGAAGTGTCCAATGGTAGAGTGCATCTGCTAAATGGAAGTGGGCCTCCTTATTTCCACAGCTACCTGTACATGAAAAGTGGGCTGATGATCCCGTGGCGCAGGCGCTGGTGTGTTTTGAAAGACGAGACCTTCATGTGGTTCAGGGCGAAGCAGGACTCTCTTAAGTCAGGCTGGCTCTACAAGAAAGGTGGAGGAATGTCTACTCTGTCCCGGAGGAACTGGAAGATGCGCTGGTTTGTCCTTCGTGACTCCAAACTCATGTATTTCGAGAATGACAGCGAGGAGAAACTGAAGGGAACCATTGACATACGAGCAGCCAAGGAAATTGTGGATAACCATGAGAAGGAAAATGCACTGAATATTGTAACTGAAGACAGGACCTACCAGATCTATGCAGAATCTCCTGAGGATGCTAGTGGCTGGTTCAATGTGTTGAGCCGTGTTCACAGCGCCACTCCAGACCAGCTTCTGCAGATGCAGCATGAGCAGGCCAACCCTAAAAATGCAGGAACACTGGATGTTGGGCTTATCGACTCTGTATGTGCCTCTGACAACCCAGACAGgCCAAACTCATTTGTCATAATCACTGCTAATCGTGTGATACATTGCAACACTGACACGCCGGAGGAAATGCACCACTGGATCGGCCTCCTGCAGAAGCCTAAAGGAGACTCCAGAATAGACGGCCAGGAGTTCATAGTGAGAGGCTGGCTGCATAAAGAGATGAAGTCCAGTGGGAAGAGCACATCTCTTAAGCTGAAGAAACGCTGGTTTGTTCTGACCAACAACTCACTGGATTATTATAAATCATCAGAGCGCAGTGCGTCCAAACTGGGAACACTGGTGCTCAACAGCCTTTGCTCGGTTGTTCAGCCTGATGAGAAAGTCTACAAGGAGACAGGTTACTGGAACATAATAGTTCATGGAAGAAAGCATTCTTACCGTCTCTACACCAAACTACTGAACGAAGCCATGAGGTGGGCTTCAGCCATTCAGGTGGCCATTGACAACAAAGTTCCCATTGAAACACCGACCCAGCAACTCATCCGAGATATCAAGGAGAGCAGTCTGAATGTGGAGGCTGTGGAGCAGATGTACTGGAGGAACCCCATCCTGAGATACACACAGCACCCGCTGCACTCGCCCCTGCTGCCCCTGCCATACGGAGAAGTCAACATCAACTTGCAAAAAGAGAAAGGCTACACCAGCCTGCAGGATGAGGCAGTCAAGATCTTCAACTCATTACAAGAGATGGAAGCCGTGTCTGATCCGATGCCCATTATTCAAGGCATCCTACAGACCTGTCAAGATCTGCGGGCGCTCAGAGATGAAGTCTACTGTCAGCTGATCAAACAGACCAATCACGTGCCTCAGCCCAACAGCCCTGCCAACCGCGCACACTGGCATCTGCTCACCTGTATGAGCTGCACCTTCCTGCCCAGCCGCGGCATCCTCAGATACCTCAGATTCCACCTCAAAAGGATAAAGGAGTTGTTCCCTGGAGCAGAAATTGAGATGTTCGCTGTGTTCATTGGTGATTCACTGAAGAAGACAAAAGCACGGGAGTTTGTGCCTTCACAAGAGGAGATCATCGCCCTCCTGAACAGACGTGAGATGACAACCACTGTTTACTGCCACGGTGGAGGATCCTGCAAGATTTCAATCAACTCTCACactacagcaggagagGTGGTAGAGAAACTAATCCGAGGCTTGGCTATGGAGGACAGCAGGAACATGTTTGCTTTGTTCGAGCATAACAATACCATCGACCGTGCCGTGGAGAGCAGGGTGATTGTGGCAGATGTGCTGGCTAAGTTCGAGAGGCTGACAGGAAGTGAGCTGGAGGAAGACGGCCCATGGAAGTTGTACTTCAAACTGTATTGTTTCTTGGATGTGGAGAGCATGCCCAAGGAAGGAGTGGAGTTTGTCTTCATGTTTGAGCAGGCTCATGAAAGTTTAATAAGCGGTCATTTCCCTGCGCATGAGGACACCCTCCAGCACCTTGCTGCTTTACGTCTGCAGTACCTGTATGGGGATGTGTCACGGGTCAACTGGAGCTTGGACAGCATCTACCCCACTGGTTGTCTGCGCAGCCGCATACTTCAATTCACCAAAGTAGGAGGTGCAGCTGGATCGGGACAAACCCTAGAAAGGAGGAGGACGAGCTTCCTGGATGGCACTCTGAGGCGGGGGCTGAAGACCGGCACCATGAAGAAGCAGCGCAGTATGCAGGAGGAACAAATGCTGGAAATGTGGATCAAGGAAGAGACTTCAGCCACCAGAGCCAGTATTATGGAAAAATGGAGTCGGCTGCATGGCCTGGATCAGCATCAAGCCATGGTCAAATACATGAACATCATCAAAGAGTGGCCTGGGTATGGGTCAACGCTGTTTGATGTAGAGTGTAAAGAAGGTGGTTTCCCTCATGATCTCTGGCTCAGCGTCAGTGCTGAGAACGTGTCTGTGTATAAAAGAGGAGAGGCCAAACCCCTGGAGACCTTCCCTTATGAGCACATTGTCTTCTTTGGTGCTCCTCACGCTAGTACATACAAGATCACAGTGGACGGGAGAGACATGTTCTTTGAGACACCTCAGGTTGGAGAGATAACCAAAATAATGAAAGCCTACATCAACATGATTGTTAAGAAACGATGCAGTGTCAGATCAGTGGCCAGCTTTGGGAGCAACTGGATCAGGTGA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016459 myosin complex cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-237 Predicted to enable ATP binding activity; actin binding activity; and cytoskeletal motor activity. Predicted to act upstream of or within signal transduction. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be part of myosin complex.

Ensembl:

ensembl_id ENSDART00000138360

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074006 lncRNA downstream 7948 12655305 ~ 12656425 (-) True XLOC_037685
TCONS_00074001 lncRNA downstream 69596 12589956 ~ 12594777 (-) True XLOC_037682
TCONS_00075305 lncRNA downstream 262575 12352152 ~ 12401798 (-) True XLOC_037678
TCONS_00075304 lncRNA downstream 492588 12163937 ~ 12171785 (-) True XLOC_037677
TCONS_00075303 lncRNA downstream 492591 12076843 ~ 12171782 (-) False XLOC_037677
TCONS_00074010 lncRNA upstream 44338 12727186 ~ 12736053 (-) False XLOC_037686
TCONS_00075306 lncRNA upstream 207050 12889898 ~ 12902782 (-) False XLOC_037688
TCONS_00075307 lncRNA upstream 216320 12899168 ~ 12903013 (-) True XLOC_037688
TCONS_00075308 lncRNA upstream 262709 12945557 ~ 12948957 (-) True XLOC_037689
TCONS_00075309 lncRNA upstream 271719 12954567 ~ 12956248 (-) True XLOC_037690
TCONS_00074005 mRNA downstream 5233 12655278 ~ 12659140 (-) False XLOC_037685
TCONS_00074004 mRNA downstream 11389 12648705 ~ 12652984 (-) True XLOC_037684
TCONS_00074002 mRNA downstream 38988 12596038 ~ 12625385 (-) False XLOC_037683
TCONS_00074003 mRNA downstream 39751 12598081 ~ 12624622 (-) True XLOC_037683
TCONS_00073997 mRNA downstream 69370 12579411 ~ 12595003 (-) False XLOC_037682
TCONS_00074009 mRNA upstream 28943 12711791 ~ 12760323 (-) False XLOC_037686
TCONS_00074011 mRNA upstream 70124 12752972 ~ 12811936 (-) True XLOC_037686
TCONS_00074012 mRNA upstream 151566 12834414 ~ 12870537 (-) False XLOC_037687
TCONS_00074013 mRNA upstream 185199 12868047 ~ 12885201 (-) False XLOC_037687
TCONS_00074014 mRNA upstream 185561 12868409 ~ 12886108 (-) False XLOC_037687
TCONS_00073999 other downstream 69650 12584643 ~ 12594723 (-) False XLOC_037682
TCONS_00073998 other downstream 69656 12582266 ~ 12594717 (-) False XLOC_037682
TCONS_00074000 other downstream 69668 12584903 ~ 12594705 (-) False XLOC_037682
TCONS_00073978 other downstream 809068 11822379 ~ 11855305 (-) True XLOC_037675
TCONS_00073973 other downstream 1092318 11571973 ~ 11572055 (-) True XLOC_037671
TCONS_00074018 other upstream 202904 12885752 ~ 12887858 (-) True XLOC_037687
TCONS_00074026 other upstream 1156894 13839742 ~ 13853399 (-) True XLOC_037696
TCONS_00074033 other upstream 1410393 14093241 ~ 14108880 (-) True XLOC_037700
TCONS_00074049 other upstream 2887495 15570343 ~ 15572163 (-) True XLOC_037710
TCONS_00074050 other upstream 3002898 15685746 ~ 15689059 (-) True XLOC_037711

Expression Profile

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