RNA id: TCONS_00074015


Basic Information

Item Value
RNA id TCONS_00074015
length 833
RNA type mRNA
GC content 0.45
exon number 6
gene id XLOC_037687
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 12834414 ~ 12888157 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTATTCTTAGTCCATCAAGGAGATTGTGGAAGAAGAAAACTCCTAAACCTGTTAGTCATCCAGTACCAAACACTAATGGCTGTTTTGTGGTCAGTGCCAGCAGAGGGAGAAGATGCTAAAGAAGAAAGTTCAGGAGAAGATGATTCAGGAACACTAGAGACTGTGGAGGTGACGCTGGGAACTTTGGTCCTGAGAGAACACGAGATCTATCCTAATAAGAAGAAAAGGAGGAAGCGGAAAGAGAAAAGAGAAGACTCAAGCAGTCGAGAAACAAATGAAGATAAGGCAGATGATGAAAATATGGACGAAGGTGAACTGGAAGTTGAAAGTGACTCTAAAGAGATGCAGAGGAAGTCAAGGGGCAGAAGGAAACCCAAAGGCAAAAAACCTCAGCCTGAAGAGGATGAAGTGGATGAGTCTTGGGAGTACAGTTTAAGGGATGCTCTCTACACTGCCTGTAAAACTGGAGACATCCAGTCATTGCGCAGCCTCCTTCATCTACCGGAGGACGAAGAGAGCAGAAGAGAGAGAACCACTGAAGAAGATCCTGCTTCACAGAGTTCAGATCTTCTCAACAAGCCCATAGACTCAGCAGGCTTCACTTTACTGCACGTGGCTTCAGCAGCCGGACAGAAGTCTGTCATCAGACTGCTAATGGATGCAGGGAGTGATCCGGCCAACAAGACTAAAAAAGGACAGACTCCATATGGTGTCGCTCCTGAAAAGGATACAAGAAACGTGTTTAGAAAATACATGGCTGAACACCCTCATAAATATGACTACACAAAAGCACAGGTTCCTGGACCGCTAACCGAAGATATAGAGTCCAAAA

Function

GO:

id name namespace
GO:0072671 mitochondria-associated ubiquitin-dependent protein catabolic process biological_process
GO:0030433 ubiquitin-dependent ERAD pathway biological_process
GO:0071630 nuclear protein quality control by the ubiquitin-proteasome system biological_process
GO:0036266 Cdc48p-Npl4p-Vms1p AAA ATPase complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050309-80 Predicted to enable metal ion binding activity. Predicted to be involved in ubiquitin-dependent ERAD pathway. Predicted to be located in cytoplasm. Orthologous to human ANKZF1 (ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1).

Ensembl:

ensembl_id ENSDART00000131385

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074010 lncRNA downstream 134512 12727186 ~ 12736053 (-) False XLOC_037686
TCONS_00074006 lncRNA downstream 214140 12655305 ~ 12656425 (-) True XLOC_037685
TCONS_00074001 lncRNA downstream 275788 12589956 ~ 12594777 (-) True XLOC_037682
TCONS_00075305 lncRNA downstream 468767 12352152 ~ 12401798 (-) True XLOC_037678
TCONS_00075304 lncRNA downstream 698780 12163937 ~ 12171785 (-) True XLOC_037677
TCONS_00075306 lncRNA upstream 15124 12889898 ~ 12902782 (-) False XLOC_037688
TCONS_00075307 lncRNA upstream 24394 12899168 ~ 12903013 (-) True XLOC_037688
TCONS_00075308 lncRNA upstream 70783 12945557 ~ 12948957 (-) True XLOC_037689
TCONS_00075309 lncRNA upstream 79793 12954567 ~ 12956248 (-) True XLOC_037690
TCONS_00075311 lncRNA upstream 222447 13097221 ~ 13118586 (-) False XLOC_037691
TCONS_00074012 mRNA downstream 28 12834414 ~ 12870537 (-) False XLOC_037687
TCONS_00074011 mRNA downstream 58629 12752972 ~ 12811936 (-) True XLOC_037686
TCONS_00074009 mRNA downstream 110242 12711791 ~ 12760323 (-) False XLOC_037686
TCONS_00074008 mRNA downstream 134476 12664373 ~ 12736089 (-) False XLOC_037686
TCONS_00074007 mRNA downstream 187717 12664373 ~ 12682848 (-) False XLOC_037686
TCONS_00074016 mRNA upstream 10972 12885746 ~ 12888082 (-) False XLOC_037687
TCONS_00074017 mRNA upstream 10975 12885749 ~ 12888157 (-) False XLOC_037687
TCONS_00074020 mRNA upstream 477534 13352308 ~ 13355071 (-) True XLOC_037694
TCONS_00074024 mRNA upstream 940189 13814963 ~ 13963078 (-) False XLOC_037696
TCONS_00074023 mRNA upstream 940189 13814963 ~ 13963078 (-) False XLOC_037696
TCONS_00073999 other downstream 275842 12584643 ~ 12594723 (-) False XLOC_037682
TCONS_00073998 other downstream 275848 12582266 ~ 12594717 (-) False XLOC_037682
TCONS_00074000 other downstream 275860 12584903 ~ 12594705 (-) False XLOC_037682
TCONS_00073978 other downstream 1015260 11822379 ~ 11855305 (-) True XLOC_037675
TCONS_00073973 other downstream 1298510 11571973 ~ 11572055 (-) True XLOC_037671
TCONS_00074018 other upstream 10978 12885752 ~ 12887858 (-) True XLOC_037687
TCONS_00074026 other upstream 964968 13839742 ~ 13853399 (-) True XLOC_037696
TCONS_00074033 other upstream 1218467 14093241 ~ 14108880 (-) True XLOC_037700
TCONS_00074049 other upstream 2695569 15570343 ~ 15572163 (-) True XLOC_037710
TCONS_00074050 other upstream 2810972 15685746 ~ 15689059 (-) True XLOC_037711

Expression Profile

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