RNA id: XM_039800255.1


Basic Information

Item Value
RNA id XM_039800255.1
length 1794
RNA type mRNA
GC content 0.43
exon number 4
gene id zgc:194242
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 19996477 ~ 20000438 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

catgtggtccttgggggctacctggtgcccgcgggcaccgtgttggtgacccctgttctagatcatcatatgtttgtagtGTGCTGACCTACTGTAAAGGACTCGCATGTTTTTCACAGGAACTGTTAGAACATTTGTCATGAATATTTTCAATTGCAAATTGCAAGTATTATTAGGCTTAAGAAGTGGGAGACATTTTCAGCCCATAAAAGAACACTTAAGATCACCAAACCACTATTTCACCTTTCTACATGACAGCACAACTGACAAATTGAAGTGGACTGAAATAATAGTGAAAGAGTTTGGCCATCCGACACGATCAGTGGCAGGGTGGCTGATCAGTAAGTTGCTCACAGTGTGCAACCGCGTTCTTGAGGAGAATACGGTTCAGCTGTGTGGGATCCGACCTGAGGACACAGTGCTGGAGCTGGGTCACGGCCCGGGTCATGGTCTGCAGTCAGCAGCCAAACTGCTCACAGAGCCCACAGGCCGCCTTATAGGTGTGGATTACTCGGCATACATGCATCAGATGGCAAGTGATCGAATGAAGGATTTTGTGGCCAGTGGGAAAGTGACCCTATACCACTGTGATGTAGAAGCAATGCCTCTGGCAGACAGTGTTGTGGATAAAGTCTTTCATTGTAACTGCTACTACTTCTGGTCTGACCTTGAGAAGGGAGCCACAGAGATACACCGGGTAATGAAACCAGGAGGCTTGATGGTGACCACGCTGAGGCTGTCAAACTGGCCCCAGGAGCCCTACATGACAGCTCTAAGAGACTCTGGCTTTACTGATGTCAGAATGGAAGACAAACAGCATAAAAACATTACTTTTCAGGCTATCTATGCCACTGCCTCAAAATGAGATTGAAATCAAACTGCAAGTAAGAGATTGTGCgtattatagcctatatttaatatctggttttaaatgtgatttttaatTGTTCTTAATGGTACTTTGGAAAATTGGTTCTCCTCTCTATGGCAGATTTGAAATGcctgaatgaaaataaatcaaacacagatatacaattaaatacaatacagattatttgtttttgtttaataacTGAATTGATGGAGAGGAATGAACACCAGTCCCTCCAGTCGGTTTACGAACGTCTGTTCTTAGGCAAGCTCAGAGGATAGTGACTGGCCCATCACATATCCTCCACACAGAACATGAGCTCTTGCCCTCTGGCAGAAAATGCAGAGTCCCTCGCTGTAAACCTCAACCATTTTAAAAACGAATTTGTTCCTACCTctgttaaacatttaaacaatgctGCTTGAAGCCATAGGGATTTTGCAATAGTTTCATGGTTGTTTTACTGGGGGGTGAaggaaatactgtatgtgttacaTTCAACATGTTTTTACCTTTGGGATGTGTGCAATACTTTATGTGCAGTTTATTGCTGTGACTCCTACAATTGGTgctggattttttatttatttattatttataactGTCAGCGCATTATTCATGTGTACAGCTGGgggtccaaaacaaatttccctaAGGGGATGATAAAGTATATAGTATCGTATGCACGGAATCTTGACCTGATTGTAAATACTTAGGTGTTTCCCACTTGGATGTCATCAGACAATTCACCTTTGGCTGAATAGACCCTTTGTCTTGAAAACAAAGGCATGCAAAACACTGAATGAAAGAAACCACCCTGATCAGCGGGGGAGGACCAAGCCAAggtataaagagagagagagcaaaccaACATTTGCATTGTGTACCATGCTCTGAGCATTAAAGGTGTGACAATACTGTAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68535 lncRNA upstream 1088 19995881 ~ 19996116 (+) True G51283
TU68534 lncRNA upstream 5011 19990773 ~ 19992193 (+) True G51282
TU68451 lncRNA upstream 191911 19778068 ~ 19805293 (+) True G51221
TU68443 lncRNA upstream 195627 19775320 ~ 19801577 (+) True G51220
TU68552 lncRNA downstream 63680 20063992 ~ 20064343 (+) False LOC120558901
TU68592 lncRNA downstream 157477 20157789 ~ 20171119 (+) False G51317
TU68590 lncRNA downstream 161107 20161419 ~ 20165215 (+) True G51317
TU68645 lncRNA downstream 445931 20446243 ~ 20532569 (+) True LOC120559772
XR_005639130.1 lncRNA downstream 660985 20661297 ~ 20662553 (+) True LOC120558477
XM_039800216.1 mRNA upstream 21009 19973203 ~ 19976195 (+) True LOC120558887
XM_039800223.1 mRNA upstream 46183 19942024 ~ 19951021 (+) False kcna2b
XM_039800225.1 mRNA upstream 46183 19942024 ~ 19951021 (+) False kcna2b
XM_039800224.1 mRNA upstream 46183 19942284 ~ 19951021 (+) True kcna2b
XM_039800220.1 mRNA upstream 71768 19919394 ~ 19925436 (+) True LOC120558889
XM_039800266.1 mRNA downstream 837 20001149 ~ 20004112 (+) True ube2t
XM_039800265.1 mRNA downstream 839 20001151 ~ 20004112 (+) False ube2t
XM_039800272.1 mRNA downstream 58802 20059114 ~ 20061812 (+) True LOC120558918
XM_039800240.1 mRNA downstream 63682 20063994 ~ 20065735 (+) True LOC120558901
XM_039800230.1 mRNA downstream 78961 20079273 ~ 20094109 (+) False tead3a
TU68439 other upstream 228640 19767652 ~ 19768564 (+) False LOC120558920
TU68363 other upstream 535090 19456491 ~ 19462114 (+) False LOC120558947
unassigned_transcript_226 other upstream 1267653 18729480 ~ 18729551 (+) True trnaa-ugc_5
TU68128 other upstream 1310902 18682143 ~ 18686302 (+) True G50983
TU67812 other upstream 2224620 17741460 ~ 17772584 (+) False LOC120559485
unassigned_transcript_228 other downstream 321199 20321511 ~ 20321582 (+) True trnah-gug_9
unassigned_transcript_229 other downstream 324857 20325169 ~ 20325241 (+) True trnaf-gaa_3
TU68644 other downstream 445931 20446243 ~ 20532462 (+) False LOC120559772
TU69094 other downstream 1289276 21289588 ~ 21290962 (+) True G51716
TU69116 other downstream 1360978 21361290 ~ 21363640 (+) False G51734

Expression Profile