RNA id: XM_039800240.1


Basic Information

Item Value
RNA id XM_039800240.1
length 1461
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC120558901
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 20063992 ~ 20065735 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAAGCCAAGACTTGAGCCAGAAAGGAATACACTATCTGAACAACAACCACAGGAATATGTTTGACTTAACTTCCCTGTGGAATTCATCCCACCTGCCTACAGCCTTCAAGAAAACCTGCTCGATCAaacttcacagcttctctgtcTTCCCTGGTTTCCATCTTCAGTGATGGCTGAATGGAGTTGGGTGGCCTACACAGTACTAGAAGTGTTTATTGCTGTGGCCTGTTGCCTTGGCAATGTGTTGGTGGTGTGTGCGGTGTGTATTGGTATCCGGGATTCCCTCCGGGAGCCCACCTTCTGCTTCCTCGTTTCCCTGGCAGTGGCTGACTTCCTAGTTGGTGTGGCGGCTGTGCCCCTGGCTGTACTGTTGGATGGCTGGGTGAGCGTGACCCCTGACCTGTGCCTACTCCTCAGCTGTGTCGTGCTCGTGCTGACTCAGGCCTCTGTGCTGTCACTGCTTGCTATCGCCGTGGACCGGTACCTCCGGTTACATACACCGCTTAGATACAAAGTCCTGGCCACACAGAGGCGTACATGGATGGCCTTGTCTGTGTGCTGGACACTTTCCTGTCTACTCGGGTTCACCCCTCTATTTGGCTGGCACAACTACTCCTCTCTTGCATCTGATTCCAACAATAaatcctcctccccttctgtcATATCTCCACCCTGCACCTTCCTCTCAGTTATCTCCCTCCCCTTCATGGTTTACTTCAACTTTCTGGGATGTGTCATGGCGCCCCTGCTGGTCATGACACTCCTCTACACTCGAATCTTCTGGAGCCTGCAGGGCCGTCTAAAAGAGAGCGGTCCCCAAGCCCAGGCTTCTCTGCTCAGGGAAAAGAGGCTGGCCTGCTCCCTGGCTCTGGTTCTCATTTTGTTTGCCGGCTGCTGGATTCCTCTGCACCTGATGAACTGTCTGCTGCTGTTTCAGGGTCCTCAAGCTGTCACACAGGGGACACTCTATACAGGTATTCTCCTGTCTCATGCCAACTCAGCAGTCAATCCTGTGGTCTACGCTTGTCGCATCCCAAAGATCCAACAGGCCTACAACCAAATATGGAGGCGCTTCATCGTGTGGCTGAACTGTTGCCATGGGGACAAGCAAGTTTGCCGATCAACAACAGGCAGCCGAGCCAATCACACAGAGACGTGTGGATCAGGAGGGAAGACCCTAACAAAGGACCACAGTCATTTTAGGTCCAGTATGCTTGAGGTTTGAGTTCATGGGACTTTGTCAGGAGGTTTTAACCCACAGAACAGCTGACAATCACTGCATCCAACAATCATTTAAGGCTTTATTACACATAACCAACTGAGGAAATATAGGCAGCCAGGGAGTGTTTGAATTTGTGTGTAGGATTTGGTTTGAATGAAACCCTGCATTTGGTCGCCTACCCCTCGTCCGCAAACTTTAAGTCAAAGCTATCTCCTGAGTTTCCATTAGAGGGTGCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68535 lncRNA upstream 67878 19995881 ~ 19996116 (+) True G51283
TU68534 lncRNA upstream 71801 19990773 ~ 19992193 (+) True G51282
TU68451 lncRNA upstream 258701 19778068 ~ 19805293 (+) True G51221
TU68443 lncRNA upstream 262417 19775320 ~ 19801577 (+) True G51220
TU68592 lncRNA downstream 92054 20157789 ~ 20171119 (+) False G51317
TU68590 lncRNA downstream 95684 20161419 ~ 20165215 (+) True G51317
TU68645 lncRNA downstream 380508 20446243 ~ 20532569 (+) True LOC120559772
XR_005639130.1 lncRNA downstream 595562 20661297 ~ 20662553 (+) True LOC120558477
TU68681 lncRNA downstream 685860 20751595 ~ 20752345 (+) True G51386
XM_039800272.1 mRNA upstream 2182 20059114 ~ 20061812 (+) True LOC120558918
XM_039800266.1 mRNA upstream 59882 20001149 ~ 20004112 (+) True ube2t
XM_039800265.1 mRNA upstream 59882 20001151 ~ 20004112 (+) False ube2t
XM_039800256.1 mRNA upstream 63682 19996477 ~ 20000312 (+) False zgc:194242
XM_039800255.1 mRNA upstream 63682 19997204 ~ 20000312 (+) False zgc:194242
XM_039800230.1 mRNA downstream 13538 20079273 ~ 20094109 (+) False tead3a
XM_039800231.1 mRNA downstream 13791 20079526 ~ 20094109 (+) False tead3a
XM_039800228.1 mRNA downstream 14417 20080152 ~ 20094109 (+) False tead3a
XM_039800226.1 mRNA downstream 14554 20080289 ~ 20095601 (+) True tead3a
XM_039800229.1 mRNA downstream 14554 20080289 ~ 20094109 (+) False tead3a
TU68517 other upstream 63556 19996511 ~ 20000438 (+) True zgc:194242
TU68519 other upstream 63556 19996511 ~ 20000438 (+) False zgc:194242
TU68439 other upstream 295430 19767652 ~ 19768564 (+) False LOC120558920
TU68363 other upstream 601880 19456491 ~ 19462114 (+) False LOC120558947
unassigned_transcript_226 other upstream 1334443 18729480 ~ 18729551 (+) True trnaa-ugc_5
unassigned_transcript_228 other downstream 255776 20321511 ~ 20321582 (+) True trnah-gug_9
unassigned_transcript_229 other downstream 259434 20325169 ~ 20325241 (+) True trnaf-gaa_3
TU68644 other downstream 380508 20446243 ~ 20532462 (+) False LOC120559772
TU69094 other downstream 1223853 21289588 ~ 21290962 (+) True G51716
TU69116 other downstream 1295555 21361290 ~ 21363640 (+) False G51734

Expression Profile