RNA id: TU69454


Basic Information

Item Value
RNA id TU69454
length 2231
RNA type TUCP
GC content 0.44
exon number 2
gene id avpr2aa
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 22046763 ~ 22060645 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTGAATAACAACCCTCACAATAACACCCATAACAGCCAAGTGGGACAGTGTTACGACTATGTACCATCCTCTATCCAGTATAACAGTTGCTGTGGTGAACatgtgacaacaacaacaacaacatcgcCTACACAGCAGAAAACACTGATCGGCTCAGATTGCCAGGACTCCTACACGTCCTACGAGCTGGCCTCAGGCTCACCCCGCTGCTCCCTTGACTATGCACGCCCTCCCCCTCCAGCCAGTCCACCTCCAGCCACTCCGCCTCCAAGCATCACTAAAGCCATGTCCAAGACAGTGAGAATGACCCTGGTCATTGTGCTGGTCTATACTATCTGCTGGTCACCCTTCTTCATTGTCCAGCTTTGGGCGGCCTGGGACCCCAACCCTCCACACCAAGCAAGAGTGGCCTTCACTATCCTGATGCTGCTGGCTAGTCTGAACTCGTGTACCAACCCGTGGATCTACACAGCTTTCTCCAGCAGCGTGTCCAGAGAGCTGCAGAACCTGCTGCAGTGTAGGTCGCGAACTGGCCGCCGTGGCTCCCTGCCTGACGACTCCAGcaccacacacacctccaccaCCAAGGACAGCCTGTACTGACAGAGACTaatgaaacagaaacagacacacagagacatgtttGAAAATACATGCACGGGTGCACATGGGCCCGATGCAATGAAGTGCAACTCTGCCATCACCACCTCCAGCGTCGCAGCCTGAGAACAGAGCGCACTGACCTCTACCAGATGTTTCCAACAACAAAGGACAGCTGTACTGTCAACAGGACCTTTATCTGTAATCACTGGTCCTCTCCACCCCAGCAGAGAGGAATGGTGTCATTGAGAATGTCAACACCATTTTATGAGGGCACTGTGGAATATACAGTGGCTGTCAGTGACAACATCTGTAATGCAAAATGGCCTTGAAAGTAAAGAGCTTTCCACCTCAAATGCGGTTGAGAAGGACCCTGTGCATTGATTTATAAGAGTAAAACTCTTTCCTGCTCAGACTGAGtggagcagcagaaatgcaagGGTTGGATCACTGAATGAATGGCTTTACGGCACGCCTAATGTACAAAGCAGCAGACAAAGCAATGGGTGTAGCGAAAACAAAGCATCAGActaagtgaaagagagagacacacacatacacacatacacacatacagacatacagcaATTAGAGCGAGACGGCTATTGGACTGAAACCAGACAGGGGAAGACATGGATGTTACAGCTGCAGGAGCAGTCATGAGAAGGCTGTAGTAAAAATCTATTAATGTGAACAATCTTTGTTGAATCAAAGAAAGTAGATCAGAGGTGGATTCTTGAGGCTGTATTCATATTCACTCAGGAGGAATCCTGTTCCAAGGAACAAGAGTAATTTGTTAGCCAGATGGACAGAGATTCACTGATGAGGACAGAGTCAAGACACTGCCCCGTGAGGAACTGGAGTACTGGGGATTactgcagacagaaacacacacaaactcacaaaaaaaaaacaccaaaaaaacagAAGTGACAGGAGGAGGATTAAGCCTAGAAGAATACAAATGAACAGTCCAGATTTCTGAAACCAACTGGGACACAATTATTTATGTGATTGTATTTCGTACAAACAAAGCATATGAGGTACATAAAATTACTTTTCTGTCAGGCTCTCCTGAATGTATGAAACAAGAACATGAACATTAAGATGAAGATGCAGGAAAGAAACAAACAGCATTCCATGCACAGGataaacaatgtaaagtatatttatttaaaatgtaaggcaCATGAAATAGTATTACATTTTGTGTAAGATAAATGTTGAATGTAAATATACAATTGTAATGTCGGATATGTATAGTAAAAAACAAGTAGATGTCAaaccaaagattttttttaaagcttgacTGTAGAATCCATtcaggtcttaaagaggttatTACAGAGCTTCAACAGataagacatatatatatataaaactacaTATCAGTTTAAGAAAAACTTCACATCAACAGTGAAAATACTCCCAGTCAAACCAAGTGCCTGTAATGTTAGTAGACATTTTCAGAGGGGCCTCCCTCACTGGATTAACTCTAAATGATGTCAGCCATGTTATTCTTAGACAACGCTACCAGCAGAGCAGGACACATTTGTTACATCACACTACAAGCCATgtgttcttttctctttttatttattgttgtatAATATATAGAggcctatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69452 lncRNA upstream 25202 22031209 ~ 22031519 (+) True G52006
TU69358 lncRNA upstream 141884 21914325 ~ 21914837 (+) True G51935
TU69348 lncRNA upstream 150473 21905055 ~ 21906248 (+) True G51927
TU69343 lncRNA upstream 155718 21900444 ~ 21901003 (+) True G51922
TU69342 lncRNA upstream 156490 21899124 ~ 21900231 (+) True G51921
XR_005639160.1 lncRNA downstream 24621 22085266 ~ 22086233 (+) True LOC120558642
TU69472 lncRNA downstream 29552 22090197 ~ 22094890 (+) False LOC120558641
XR_005639159.1 lncRNA downstream 29658 22090303 ~ 22094765 (+) False LOC120558641
TU69471 lncRNA downstream 31933 22092578 ~ 22094890 (+) True LOC120558641
TU69479 lncRNA downstream 45000 22105645 ~ 22106945 (+) True G52031
XM_039800925.1 mRNA upstream 28427 22022834 ~ 22028294 (+) True idh3g
XM_039801674.1 mRNA upstream 228831 21823518 ~ 21827890 (+) True ribc1
XM_039801675.1 mRNA upstream 228831 21823518 ~ 21827890 (+) False ribc1
XM_039801688.1 mRNA upstream 248807 21783217 ~ 21807914 (+) True LOC120559721
XM_039801685.1 mRNA upstream 275771 21776471 ~ 21780950 (+) True tmem9
XM_039799730.1 mRNA downstream 50342 22110987 ~ 22119609 (+) True zgc:158263
XM_039801598.1 mRNA downstream 123651 22184296 ~ 22199110 (+) True cacnb3b
XM_039801597.1 mRNA downstream 123919 22184564 ~ 22199110 (+) False cacnb3b
XM_039801754.1 mRNA downstream 142446 22203091 ~ 22213864 (+) True rnd1b
XM_039801775.1 mRNA downstream 179837 22240482 ~ 22244763 (+) False ptges3a
TU69347 other upstream 152644 21903542 ~ 21904077 (+) True G51926
TU69309 other upstream 268399 21783266 ~ 21788322 (+) False LOC120559721
TU69195 other upstream 497372 21558890 ~ 21559349 (+) True G51804
TU69117 other upstream 692291 21361290 ~ 21364430 (+) True G51734
TU69116 other upstream 693081 21361290 ~ 21363640 (+) False G51734
TU69473 other downstream 33260 22093905 ~ 22094890 (+) False LOC120558641
TU69718 other downstream 495684 22556329 ~ 22560328 (+) True G52210
XR_005639388.1 other downstream 501509 22562154 ~ 22562521 (+) True LOC120559933
TU69870 other downstream 781421 22842066 ~ 22846938 (+) False lamtor5
TU70197 other downstream 1698589 23759234 ~ 23765153 (+) False tmem201

Expression Profile