RNA id: TU69472


Basic Information

Item Value
RNA id TU69472
length 697
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id LOC120558641
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 22090197 ~ 22094890 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCGAATGCAATGTaaaagggaggagagtaaagacagAAAGCTCCTAAAggttagttccatataaatgcacggataagtcgttgttttgtcgttattgaaaaacaatattgaccttgtagttgaaaaaagagcctcatatggagtccgttcattcgcattcggatatcgactcgttttcactgccgaggtggtagtgGCCGGAAAGTTAACAGCTgcgATGCCTAAACTTATGCCTCTCagtccagtggagctgctgctctaAAGAGCCCTGCTCCTCTCCCCCTGCGTCCATCCCGCTTCCCTTTCTTTTGGGGAGCTtgggcagagggagaggaggcggTGGAGGAGGGATCCTGCAGTGCTTGCCGCGAGAGAAGTTCCATGAAGACAGAGTCCATCTGGCGACAGACCTCCTGTGagatgaaataaacaatgTGTCATGCATTTCTCATACACCGGCCCTTGTACTTCACTCTGGCTGGGGAAGATGCTTTCGTGCTGGAGGATGATGCTGTTCACCAGGGCGTTGATCTGAGGCTGCAGGGTGACAACATCATCATCGTGAGCCCCTCTTACCAGGCTGGGGCCAAAACACACAGCCAGGTTGTAAGGCTGCATCATGTTCTCATCACTGTACTGAGACACACTAGAGGCAGGGAGCAGAAACACAAAATTATCCAATGAAGGAGAAAGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639160.1 lncRNA upstream 3964 22085266 ~ 22086233 (+) True LOC120558642
TU69452 lncRNA upstream 58678 22031209 ~ 22031519 (+) True G52006
TU69358 lncRNA upstream 175360 21914325 ~ 21914837 (+) True G51935
TU69348 lncRNA upstream 183949 21905055 ~ 21906248 (+) True G51927
TU69343 lncRNA upstream 189194 21900444 ~ 21901003 (+) True G51922
TU69479 lncRNA downstream 10755 22105645 ~ 22106945 (+) True G52031
TU69484 lncRNA downstream 16579 22111469 ~ 22137332 (+) False G52035
TU69483 lncRNA downstream 40445 22135335 ~ 22137332 (+) True G52035
XR_005639131.1 lncRNA downstream 78254 22173144 ~ 22176411 (+) True LOC120558498
TU69522 lncRNA downstream 140266 22235156 ~ 22237182 (+) True G52060
XM_039800163.1 mRNA upstream 30288 22046763 ~ 22059909 (+) True avpr2aa
XM_039800162.1 mRNA upstream 31179 22046763 ~ 22059018 (+) False avpr2aa
XM_039800925.1 mRNA upstream 61903 22022834 ~ 22028294 (+) True idh3g
XM_039801674.1 mRNA upstream 262307 21823518 ~ 21827890 (+) True ribc1
XM_039801675.1 mRNA upstream 262307 21823518 ~ 21827890 (+) False ribc1
XM_039799730.1 mRNA downstream 16097 22110987 ~ 22119609 (+) True zgc:158263
XM_039801598.1 mRNA downstream 89406 22184296 ~ 22199110 (+) True cacnb3b
XM_039801597.1 mRNA downstream 89674 22184564 ~ 22199110 (+) False cacnb3b
XM_039801754.1 mRNA downstream 108201 22203091 ~ 22213864 (+) True rnd1b
XM_039801775.1 mRNA downstream 145592 22240482 ~ 22244763 (+) False ptges3a
TU69454 other upstream 29552 22056721 ~ 22060645 (+) False avpr2aa
TU69347 other upstream 186120 21903542 ~ 21904077 (+) True G51926
TU69309 other upstream 301875 21783266 ~ 21788322 (+) False LOC120559721
TU69195 other upstream 530848 21558890 ~ 21559349 (+) True G51804
TU69117 other upstream 725767 21361290 ~ 21364430 (+) True G51734
TU69718 other downstream 461439 22556329 ~ 22560328 (+) True G52210
XR_005639388.1 other downstream 467264 22562154 ~ 22562521 (+) True LOC120559933
TU69870 other downstream 747176 22842066 ~ 22846938 (+) False lamtor5
TU70197 other downstream 1664344 23759234 ~ 23765153 (+) False tmem201
TU70648 other downstream 2858552 24953442 ~ 24957330 (+) True G52871

Expression Profile