RNA id: TU70027


Basic Information

Item Value
RNA id TU70027
length 2909
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G52461
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 23221926 ~ 23246504 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtacacattttatttttccactATGGcatcaaatatattttttatgttcataaAAGCTGAGCTATGAGCTCTACTTTGAATAAAACATGAAGTTCAAGCGGGTGAATACTTTTTATAGGCATGATATGTGACTGTATGGGTAGCAGACATTACTGAAAAAAACTAATACATCCTTACAGGACAATGATGATAATGATTAGAAAACATCTTGATGTTCACAGCAAAACAAACTACCTTATGTTTTGTTAAATAGAAAGCACAGGAGAGCCTTTACTTTATATTAGAAATTTAGAATGGTCTCAAAAGTAGGATAAACTTAAATTCCTTAAAGAGAGCTCTTACTGaggaaattttttttcttttcaaatgttttttttttcagccaaaTCTTATCATCAGCAGGTAAGAACTTCCTGATAAATTCAGCTGAATTCGGGATAAAATGATTTAATAACTGAACCAGCCGATTAGTCCCTcacataaccctaacccttgtgCTTTCATCACAGTGAAGATAGAGGTTTGTATTAACACCATTCCTTCAGTATTCAGGTCAACCAGCAACTGATGCAGTTTCTTGATGCATTTTATTGAGCCATTGGTCAAATAAGCATTCAAGTTCTCATTGTATTGTAAAAGGTGACTATCTTTTTCCCCACAAAGAAAACATACAGATAAGCCTGtattacatgtatgtatgtatgtatgtatgtatgtatgtatgtatatatgaacatgTATTTTTGAAGCAGAAATCTCAAAAATGATCTGTTAGGTCATTACATTGCTTCCCTTCATTAACTAAAACGGTCAACCCTCGCAGTCATGTGTGTTGGTACATTTACCACTAAAATAAGGAAACAAACACGgtcataaaataacaaaaaataaaataagttagTTAACTTAACACTAGTACTCTAAGTAGATGACCTTTATCACAGGTTTGGAGTTTTAATAAGTACCATGACTttggttatttaaaaaaaaaaaaaaaaaaactccaaccAACAAGctttcaataaaataatgtttttagcTCTTTGGATAACAGTACAACCTGCTTTAGTTCCACCATAAAAGTCTCTGTAGCACCACATTAAAACAACATATGTGCTGCATTCTCAAAAGTCTCTTTCTCAGCGTGTATTCTTGGGCTCGGTTAGGCATCCATTGTTTTGTCAGGAACTTCTGAGCATTTTCTTCACTTGGACTCTCCCAGCAGATGGATAATGAGTTCATACGTGGAGAGGACGATGGCTGTGTTAGGGATTTGTCTAATTAGCTGTGGAATGAGTCCTCTATAAAAAGCTGCATAGCCTTCCTCCACCGCTATTAACCTCCCCGTCTGGAAGAAATACTTGTACTTGCTGCCTTCCTCACGCAGCCTTGTCCGAATGACCTCTGTGGAGACAAAACGATAAGTCATTTAAATTAATACTTCGCTCTGACATtaggttgttgtgttgtgtggatGTTGGCGTTTACCGTGTGGATAAGCAATGCAGGACGCACAACCCTTTGAAAAAGCAGCTGCCATCATCAGACCCAGGAAGTCTGACGCTCCTTTCTCCTTTTCACCGTTCCGGGAGGTGAATTGGCTCTTGGCGAGGTGTTTCTTCAACGTCTCATAGATGACGAAGCAGATCATGGTCTCTGAGATGCCGGCATAAGATGCAGTTAGGCCTCGGTAGAAGCCCCGAATCCCTTCCGATTTGTAAACATAGCGGGCACACTGCAGTGCATTcatcttcttctctcctttgGCTCTAAAAGTCAAACAGGTCAAGCTCATTAGTGCCAAaaccacttttctttttttttttttcttttttttttttataaaaaaggacATGATTGTATTGAAAGATTTCCTGCAGATGCATGCTACAAATAATCACAGTGACATTATCCTAAAATTCCTGCTGATGTTGCTCCTGACGGATGCCTTGATGGTAAGCAATGGGGTAAACTTCCATATCGCAGAGAAACCTGATAATGCAGTGAGTGGTCGGAGCTGCTCTTCAGCTGCCCAAAAGTGCATTCCTCCACACTGCACTACAGACTCTCTATGGAGTGGTCAGCATCTCTTCTGCGTTGTGTGTAATGCAATTTTATTTAgtatccattaaaaaaaaaaaaaaaaaaaaacttctaaaaGCAACTAGGATTTCATGTTATAATTCTCAATTTGAGAGGATGTACaggttgatgtgtgtgtgctgccacCTTGTGGTCAGAGGCTAGCAGTGTATTTCTGCACCAACTCTCAAGTTTAAATCCCATCACACAATTTAGTTTTAGCACAACCAATAACGCATCAATTTAAAAGGCTACAAGATATAAATTCATTACCATAAAGTCTGCAGGTCACAGCAGAGAAACCGACCACATATGCCACATTAACCTACAAACTGGAGGAGGTACACCAACATGGTGACTGTCAGGGCATCGCCTGGATCAGCATGTGCATAGTGCTCAGTGATTCCTGATTTTATAAAGTTAGAGAATACAATTGCAAAGAGTCATAAAAACAGGATAAGAAACTCAAAAAAGGTGTCCAGCTACTGACACAGAAGCATACTTGAAGGCTGAGTCAGTACTGGAGGCTAGAGCAATGTTGTCAAACGGGTTCAACCCTAGAAGGATCCCAGAGAAACATGTGAAAGAGACGAAGGTGTGCCGAGCGTGCGGTCACCGTCAGCGCCGTCATTGGTAGAGCAGGTAGTTCTTAAGAGAGGCCGGCAGTGGCAGTCTATGGATTTCACCCAGACGGTCTCTTCCTAATGCCACCCTCACTGAACGCCGACACAGATCCATCAGAGAGAGGGGTTCAGCTAGGGGGAGGAGACAAGAGAGGTGAGGTGTTATGTGTTAGCAATGGCTGAATCTCATTTCAGGAGTGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69954 lncRNA upstream 28938 23187400 ~ 23192988 (+) True G52403
TU69951 lncRNA upstream 34218 23140910 ~ 23187708 (+) False G52403
TU69915 lncRNA upstream 153450 22991252 ~ 23068476 (+) False atxn7l2b
TU69903 lncRNA upstream 198598 23020806 ~ 23023328 (+) True G52364
TU69904 lncRNA upstream 198598 23020806 ~ 23023328 (+) False G52364
TU70058 lncRNA downstream 18727 23265231 ~ 23275195 (+) True LOC120558323
TU70061 lncRNA downstream 18727 23265231 ~ 23275195 (+) False LOC120558323
XR_005639092.1 lncRNA downstream 18825 23265329 ~ 23275141 (+) False LOC120558323
XR_005639093.1 lncRNA downstream 18825 23265329 ~ 23275141 (+) False LOC120558323
TU70102 lncRNA downstream 200849 23447353 ~ 23447557 (+) True G52509
XM_039800720.1 mRNA upstream 7941 23207923 ~ 23213985 (+) True LOC120559183
XM_039800829.1 mRNA upstream 14595 23205387 ~ 23207331 (+) True si:dkey-183p4.10
XM_039800831.1 mRNA upstream 14595 23205387 ~ 23207331 (+) False si:dkey-183p4.10
XM_039800832.1 mRNA upstream 14595 23205387 ~ 23207331 (+) False si:dkey-183p4.10
XM_039800833.1 mRNA upstream 14595 23205387 ~ 23207331 (+) False si:dkey-183p4.10
XM_039801909.1 mRNA downstream 30882 23277386 ~ 23281776 (+) True gpr157
XM_039799401.1 mRNA downstream 38415 23284919 ~ 23292578 (+) True LOC120558415
XM_039799402.1 mRNA downstream 38785 23285289 ~ 23292578 (+) False LOC120558415
XM_039799405.1 mRNA downstream 38785 23285289 ~ 23292578 (+) False LOC120558415
XM_039799403.1 mRNA downstream 38823 23285327 ~ 23292578 (+) False LOC120558415
TU69870 other upstream 374988 22842066 ~ 22846938 (+) False lamtor5
XR_005639388.1 other upstream 659405 22562154 ~ 22562521 (+) True LOC120559933
TU69718 other upstream 661598 22556329 ~ 22560328 (+) True G52210
TU69473 other upstream 1127036 22093905 ~ 22094890 (+) False LOC120558641
TU69454 other upstream 1161281 22056721 ~ 22060645 (+) False avpr2aa
TU70197 other downstream 512730 23759234 ~ 23765153 (+) False tmem201
TU70648 other downstream 1706938 24953442 ~ 24957330 (+) True G52871
TU70864 other downstream 2497106 25743610 ~ 25748317 (+) True tprg1l
TU70970 other downstream 2825081 26071585 ~ 26076664 (+) False G53096
TU71155 other downstream 3105956 26352460 ~ 26353463 (+) True G53232

Expression Profile