RNA id: TCONS_00074964


Basic Information

Item Value
RNA id TCONS_00074964
length 797
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id XLOC_037709
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 15517348 ~ 15530719 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tatgtaacggAGTTAAAATAAGGGTTAAATTCATGGTTCAATTGGGAACACTTACCATTGGTTTTTACCTGCAATAGCGTCCATCACAGTAGGGGGCGTTGCTACGTAATTCACCAGCAGTTCTGAGAAGCCTCTCTGCTGGTAAGCTGCTTTGGTGATCGCTGGTTAATGAGTTATTAATTATCAGGCATTTGTGAAACGTTTAAactctgtttatttcactttaagacACTGATATCACCAGAGCTGCAAACCAACTAAATCTTTGGTGCTGTGTTTGTCCCAGGTATGTTTAATTACTATTTTGTGATGTTCTGTGTTAGCCGTAGCACATATGCTACATATTCCACGTGCTAGAATTATGTGTTTTGCTGTTTATGAGTATTTATTCTGTTCTGTCGTTCCTTTTCTTAAAAAAaaagtgTTGATTATTGGTCACATaagcttaatatttattttcactaAAGTTTACTGTATTGAAATAGTGATTTGGATGAGAGATGAATAGAGGCAGTTTTATTTAACTttcatgtatgttttatttacatttataaccaCTATACATCACAATGTATAAGTTTAGACAAAATGTAATGTACCAGCAGTTCTGAGAAGCCTCTCTGCTGACACTGATATCACCAGAGCTGCAAACCAACTAAATCTTTGGTGCTGTGTTTGTCCCAGGACAATAAAAGAAGTTTAAGTGACCACACCTACCTGACTCGCAGCATTCTTCAGCATCCCAGCGCCTACACAcagtcacatatatatatatatatatatatatatatatatat

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0030163 protein catabolic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0043632 modification-dependent macromolecule catabolic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042255 ribosome assembly biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0010498 proteasomal protein catabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0019941 modification-dependent protein catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022624 proteasome accessory complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005838 proteasome regulatory particle cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005840 ribosome cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0070003 threonine-type peptidase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074048 lncRNA downstream 92709 15398425 ~ 15424639 (-) True XLOC_037708
TCONS_00074040 lncRNA downstream 1164566 14303895 ~ 14352782 (-) True XLOC_037703
TCONS_00075323 lncRNA downstream 1164584 14303895 ~ 14352764 (-) False XLOC_037703
TCONS_00075322 lncRNA downstream 1164584 14303895 ~ 14352764 (-) False XLOC_037703
TCONS_00075321 lncRNA downstream 1479548 14027772 ~ 14037800 (-) True XLOC_037698
TCONS_00074965 lncRNA upstream 238550 15769269 ~ 15777687 (-) False XLOC_037712
TCONS_00074966 lncRNA upstream 238550 15769269 ~ 15778131 (-) False XLOC_037712
TCONS_00074967 lncRNA upstream 238764 15769483 ~ 15777644 (-) False XLOC_037712
TCONS_00074969 lncRNA upstream 245289 15776008 ~ 15777601 (-) False XLOC_037712
TCONS_00074968 lncRNA upstream 245289 15776008 ~ 15777601 (-) False XLOC_037712
TCONS_00074046 mRNA downstream 92709 15362300 ~ 15424639 (-) False XLOC_037708
TCONS_00074047 mRNA downstream 154792 15362401 ~ 15362556 (-) False XLOC_037708
TCONS_00074044 mRNA downstream 309219 15014891 ~ 15208129 (-) False XLOC_037707
TCONS_00074045 mRNA downstream 309219 15143117 ~ 15208129 (-) True XLOC_037707
TCONS_00074043 mRNA downstream 524618 14800641 ~ 14992730 (-) True XLOC_037706
TCONS_00074053 mRNA upstream 255396 15786115 ~ 15789526 (-) True XLOC_037713
TCONS_00074055 mRNA upstream 405497 15936216 ~ 16062938 (-) True XLOC_037715
TCONS_00074056 mRNA upstream 567093 16097812 ~ 16109001 (-) False XLOC_037716
TCONS_00074058 mRNA upstream 596490 16127209 ~ 16239130 (-) False XLOC_037717
TCONS_00074059 mRNA upstream 598320 16129039 ~ 16133263 (-) False XLOC_037717
TCONS_00074033 other downstream 1408468 14093241 ~ 14108880 (-) True XLOC_037700
TCONS_00074026 other downstream 1663949 13839742 ~ 13853399 (-) True XLOC_037696
TCONS_00074018 other downstream 2629490 12885752 ~ 12887858 (-) True XLOC_037687
TCONS_00073999 other downstream 2922625 12584643 ~ 12594723 (-) False XLOC_037682
TCONS_00074049 other upstream 39624 15570343 ~ 15572163 (-) True XLOC_037710
TCONS_00074050 other upstream 155027 15685746 ~ 15689059 (-) True XLOC_037711
TCONS_00074051 other upstream 251329 15782048 ~ 15789364 (-) False XLOC_037713
TCONS_00074054 other upstream 367754 15898473 ~ 15899553 (-) False XLOC_037714
TCONS_00074065 other upstream 1292566 16823285 ~ 16824175 (-) True XLOC_037719

Expression Profile

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