RNA id: TU70181


Basic Information

Item Value
RNA id TU70181
length 924
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G52569
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 23686352 ~ 23687361 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccggaagtgatgaggtgttgttggtgagcgcagtcaatttgtgttgttgtgagtgagtatatggcgtgaatgaagtttatggtgactttacgtgtggtcggtgtttggagtttttatatgacgcggacctgacggaaacattggaaaaacagggaacgtatcgacagccgcggccggatcgaagctacagcaggggggcagctgagtccgtctgcagctgcaggacctggagctcactgcccattcctgggagccaaaaccgacaccacgcagctggagacccaggccgtattgctgggcccgctggagggaagggaagcccgggagaatcagatccaggactaaacggagcggactgtcacagcctgctgaagtttaaatcacaggtttcctaaagggagtctggcgggactcggactgtggacgacgaaacacgacttaaagtctcgttaaataaataaatacatgcagaaataaatgaatcattagtgggggagtgagcctggacatttcagtctgtttaaacttcactttgaagcagaacctcttagttcagaagggtgaagtttccgtttgtactcatatctgtgaactgattataataaatattctttgtattaacacattaattagtctctttgtctttttgtttaaaaaaactagaacatcgcatgagattttgacgatttatagtgattttatttccgttagacctttgcctacattgacgctgatgcattaaggacggcccatagacagtatataaggcagtgcctcccctgttccaagatggcggctctattgacgcattcgatccataactgccgtagtcatggcgacatgtatacaaaacctcatcacttccggtatgtggtacattccctttccgtgaagaatctgtcatttgtaaatttgtttcgggac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70102 lncRNA upstream 238881 23447353 ~ 23447557 (+) True G52509
TU70058 lncRNA upstream 411243 23265231 ~ 23275195 (+) True LOC120558323
TU70232 lncRNA downstream 102087 23789448 ~ 23790522 (+) True G52604
TU70233 lncRNA downstream 104118 23791479 ~ 23800868 (+) False ctnnbip1
TU70231 lncRNA downstream 126771 23814132 ~ 23814406 (+) False ctnnbip1
TU70245 lncRNA downstream 150331 23837692 ~ 23837962 (+) True G52611
TU70294 lncRNA downstream 322435 24009796 ~ 24011101 (+) True G52628
XM_039801910.1 mRNA upstream 57518 23613688 ~ 23628920 (+) True plekhn1
XM_039801911.1 mRNA upstream 57518 23613688 ~ 23628920 (+) False plekhn1
XM_039801912.1 mRNA upstream 57518 23613688 ~ 23628920 (+) False plekhn1
XM_039801928.1 mRNA upstream 84790 23588673 ~ 23601648 (+) True klhl17
XM_039799492.1 mRNA downstream 56711 23744072 ~ 23745466 (+) True foxl2l
XM_039800770.1 mRNA downstream 59004 23746365 ~ 23765165 (+) True tmem201
XM_039800771.1 mRNA downstream 59004 23746365 ~ 23757168 (+) False tmem201
XM_039801840.1 mRNA downstream 83270 23770631 ~ 23789093 (+) True pik3cd
XM_039801841.1 mRNA downstream 83270 23770631 ~ 23789093 (+) False pik3cd
TU69870 other upstream 839500 22842066 ~ 22846938 (+) False lamtor5
XR_005639388.1 other upstream 1123917 22562154 ~ 22562521 (+) True LOC120559933
TU69718 other upstream 1126110 22556329 ~ 22560328 (+) True G52210
TU69473 other upstream 1591548 22093905 ~ 22094890 (+) False LOC120558641
TU69454 other upstream 1625793 22056721 ~ 22060645 (+) False avpr2aa
TU70197 other downstream 71873 23759234 ~ 23765153 (+) False tmem201
TU70648 other downstream 1266081 24953442 ~ 24957330 (+) True G52871
TU70864 other downstream 2056249 25743610 ~ 25748317 (+) True tprg1l
TU70970 other downstream 2384224 26071585 ~ 26076664 (+) False G53096
TU71155 other downstream 2665099 26352460 ~ 26353463 (+) True G53232

Expression Profile