RNA id: TU70233


Basic Information

Item Value
RNA id TU70233
length 311
lncRNA type sense_over
GC content 0.54
exon number 3
gene id ctnnbip1
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 23791447 ~ 23814406 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGCTCTGCGACTGGAGGGATGTGACCCCGGAACAGGACGCCCTCCTACAACAACACACCATTCAAACAGAgcatagaagaaagaaaagctGGACCAGGAGGGAGCCACAGGAGCAGGGGGCATGAACCGCGAGGAGGCCCCAGGGAAGTCTCCTGAAGACATGTACATCCAACAGAAAGTGCGGGTCCTGCTCATGCTAAAGAAAATGGGATCAAATCTTACGCCCAGTGAAGAGGCTTTTCTCCGGAATTACGCAGGTGTGGTCCACAGTCAGATGAGCCAGCTACCACAGCACAACATAGACCAGGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70232 lncRNA upstream 957 23789448 ~ 23790522 (+) True G52604
TU70181 lncRNA upstream 104118 23686438 ~ 23687361 (+) True G52569
TU70174 lncRNA upstream 104463 23686352 ~ 23687016 (+) False G52569
TU70175 lncRNA upstream 104463 23686438 ~ 23687016 (+) False G52569
TU70102 lncRNA upstream 343922 23447353 ~ 23447557 (+) True G52509
TU70231 lncRNA downstream 13264 23814132 ~ 23814406 (+) False ctnnbip1
TU70245 lncRNA downstream 36824 23837692 ~ 23837962 (+) True G52611
TU70294 lncRNA downstream 208928 24009796 ~ 24011101 (+) True G52628
TU70296 lncRNA downstream 212095 24012963 ~ 24013301 (+) True G52629
TU70381 lncRNA downstream 260195 24061063 ~ 24073977 (+) False LOC120558580
XM_039801840.1 mRNA upstream 2386 23770631 ~ 23789093 (+) True pik3cd
XM_039801841.1 mRNA upstream 2386 23770631 ~ 23789093 (+) False pik3cd
XM_039800770.1 mRNA upstream 26314 23746365 ~ 23765165 (+) True tmem201
XM_039800771.1 mRNA upstream 34311 23746365 ~ 23757168 (+) False tmem201
XM_039799492.1 mRNA upstream 46013 23744072 ~ 23745466 (+) True foxl2l
XM_039799300.1 mRNA downstream 48746 23849614 ~ 23890973 (+) True clstn1
XM_039799303.1 mRNA downstream 48747 23849615 ~ 23890973 (+) False clstn1
XM_039799301.1 mRNA downstream 48747 23849615 ~ 23890973 (+) False clstn1
XM_039799304.1 mRNA downstream 48747 23849615 ~ 23890973 (+) False clstn1
XM_039799306.1 mRNA downstream 93345 23894213 ~ 23904039 (+) False nmnat1
TU70197 other upstream 26326 23759234 ~ 23765153 (+) False tmem201
TU69870 other upstream 944541 22842066 ~ 22846938 (+) False lamtor5
XR_005639388.1 other upstream 1228958 22562154 ~ 22562521 (+) True LOC120559933
TU69718 other upstream 1231151 22556329 ~ 22560328 (+) True G52210
TU69473 other upstream 1696589 22093905 ~ 22094890 (+) False LOC120558641
TU70648 other downstream 1152574 24953442 ~ 24957330 (+) True G52871
TU70864 other downstream 1942742 25743610 ~ 25748317 (+) True tprg1l
TU70970 other downstream 2270717 26071585 ~ 26076664 (+) False G53096
TU71155 other downstream 2551592 26352460 ~ 26353463 (+) True G53232
XR_005639211.1 other downstream 2578808 26379676 ~ 26382295 (+) True LOC120559113

Expression Profile