RNA id: XM_039801523.1


Basic Information

Item Value
RNA id XM_039801523.1
length 3547
RNA type mRNA
GC content 0.41
exon number 4
gene id ctnnbip1
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 23791447 ~ 23814406 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGGACTCTCGCTGCGTTGAGTCAGTTCGCCGAAGCTCTGCGACTGGAGGGATGTGACCCCGGAACAGGACGCCCTCCTACAACAACACACCATTCAAACAGAgcatagaagaaagaaaagctGGACCAGGAGGGAGCCACAGGAGCAGGGGGCATGAACCGCGAGGAGGCCCCAGGGAAGTCTCCTGAAGACATGTACATCCAACAGAAAGTGCGGGTCCTGCTCATGCTAAAGAAAATGGGATCAAATCTTACGCCCAGTGAAGAGGCTTTTCTCCGGAATTACGCAGGTGTGGTCCACAGTCAGATGAGCCAGCTACCACAGCACAACATAGACCAGGGTGCAGAGGACGTGGTGATGGCGTTCTCACGGTCAGAGACGGAGGATCGCCGACAGTGACCCTGGCCCCCCCACCCCAATTCCACCCCACTGCATCCCTCCCCACCCCCGTCCCACCCCACACCTGATCCACAGCAACCCAAACTCCACAAACCTGACACTGATGAGCTCAGGAGAGGATGGGCACCCGGGAGGGAcagaagaggaggggagagacaCCAGGAGGTGGCTGCCTCGCTCTCTCCCATCCCTGACTCCTCCTCATACAAGCTGGCACACCATTACCTGAGATGCACTCAAGTGCTTCACTGTGGGTTGAAGCCTCGGCAACAAGGCAGTCAGTGAAAACACTCACAAATTGTGGGATGAATATCAAatgtagtcttttttttttttttttttaattattattattttgtctgggtgggttagtttagttttgtattattttgtctGTTGAGACTTTAGGCAGTGTTACATGTTATATCTGCTGTGGTCACTGGAGGAGGCGACCAGTCAGCAGCTGATTGAAGCAAAGAGAAATATAGTTTTGGTCAAGCAGCGAGTGTGATGATTGGTCGTGTTAGGGGAGAGattcttttaattatttctgCTTACCCTAATGGGGCTGAAATTGTTTTTTGATTTAGCTATtgtgttataaaagcttttgTATTCTGTCACACagggggcctcatttataaacattttgtgtgtaaaagaggAGGCGTGAAAGATGGGTATGCCATCTCCCACGCAGCTGTTGGGATGTTAGTGGAGAGCATCAACACGTCTCCTGGAACCTGCACGCTGAAGGCAAAGTAGTGATATAAAATCTAATGTATTAATAACTCAGACAAATGATTTCACCTAATATAAAATTCTGCTGCAgcgtagtcttgcattgccagacctatctccacagctggagtatggtctggctacacagTATATCTATTCTGGGATGGAGCGTAAGacactctggcttgtttgtgttttttcaaaCCAATCCCAACCGTCCTGGGCAGCACTAAGCCCTGCAGCAATGGTGCCCCATGCAAAATAGTTAGCGGAGATAATGGAAGGGGAGAGACATCGGTCAGGCTTAATCCAAGCAATGGACATCCATTGAGCCAGACTAAGTGCAGTGAGCTCCAATATGCAGTCATGTTTTTTTGGtgttatacttttattttagaATAATTTGACTTTCTGGTCACGCAGCGCTCACTGCTGCTGTGACCCGCTGATTGTCTCTTTATTGGTCAAActagaaatacaaacaaacaccaAACAGTTAATCTAACTGACTCAAGATCTCATTTCTCTTGGATGTGCCGTCTGACCTTTTGTTCACGTGCAAGTATTAGATTGACATGCTGATTGATGTGTGTATTAACACTCACAACAGACCTGTCATTAATCACATAATGTTTAATTATGGGAGTTAACAGCGCAGGATGACGAGGCCAGTGACATGATCAACGTGTAAATGAAAAACTGCGttaaggtgagtgtattttCTTCTCGACaaatctacgcacagttttataaatgggGCCCCTGTTGTTGTTCTGCTGCTTTATTTTGAACCATAGGCTGTTGAGAGTGCAGCAATGCTTTTCTCTTGAGGAAAGCGTAAGAATTAAAGACACTAGCAGACATAATCACATGAAACACAGCTGTATACACATTCTCCCCAAACACTGGTTTTGGGTTAttgtgactttttctttttttttttttaattgtacagATAGTTGGGAAAATACAATAATGAATTGATCGTGccaattgtattttattttttattttttttaatctgtgagataaaaaaaaataacctaaTGATTTAAGAAAATTGATAAAGAGACGAGCCGTAGTTgtaatttattgtttattgaatTGACTTCCTTGAACACATCATTAAAGAAGGAGAACCAGTAGATAGTTTAATGTCCTCATCAGTGGCTCTTTGTTCACACTAAAATCACACACTCTAATTTTTAACTACCTGTAACTAAACACGTGAAGCCAAACATAAGAGCTGTGTGCTAGTTCTGACTGTACTTTATCTCTTGCACTATTATCAATGGGATATttgcaaaaaatacattttgatatttAGGGCAGAGATTCTATGTTTGGTTCAATACATGAAAGAAGACTTTGTaaccatgtgttttttttattcctttactgatttcaacaacaacaaaaaatctcTTGTGTTAATTGACTCAACTGGAAATAGCTCAAAGGAATATTTGTTAACAACCAACATGTTTTTTCTAGTAACATGCTCaatatttaatgtgtttttaagtATGGTTTGTTAACTTGTATAACTTAAAAATAATTGTAACGTAATGTTTTGAAGCCAAGCATGTCTGCCTCGTGGTTTATAATGTTCATTCTAGTGGAGCCGAGGATTTTGGAAGCCTTGCCACGTTAACCATTGTTTGTACATTCTTGACATTTGTGGAAGCTACTTgctatttttaaatgtttcagaaaaaaaaaaaaaaaacattattttgtatGGGTAACATGTTATCCATTATTTGTTGTTGGCAATAACTTCTATTTGAATTTCCTCAGCAATCATTGCTATGTAATCAGCCAACAGATATATCATGCTGTCCGCTTATGGCTATGACAAAGACatttgtctttttatgtttacttttgttttaaaaCATTCTTTATTTGTCTATGCAttgttttcttcctctctctaaaAGGCATCTTACTGTACATTCTACCTGTCCGGGTTGTTCTACAGCCTTCattcaaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatcattgAACTTGCTTTGTTTTGATTTTCAGCATGCTGTTCAGTGTGACTAGGATCGATTTCTCTTTTTACTGTGATGACCTGACGTTGCCtaattaacctttttttttttggccttgcttttgtatttcattttccTCTCAGTCATCATTGATTAGTTGGTTTGGTTTTGTATGGCTGCTGACCATGTATTGACTTAATGCTTCCAAATCCTATACCAACTGAACCATTAAAGATATTTTAAACAGTGAAAA

Function

GO:

id name namespace
GO:0030178 negative regulation of Wnt signaling pathway biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0001658 branching involved in ureteric bud morphogenesis biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0008013 beta-catenin binding molecular_function

KEGG:

id description
K04493 ICAT, CTNNBIP1; beta-catenin-interacting protein 1 (inhibitor of beta-catenin and Tcf-4)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70232 lncRNA upstream 925 23789448 ~ 23790522 (+) True G52604
TU70181 lncRNA upstream 104086 23686438 ~ 23687361 (+) True G52569
TU70174 lncRNA upstream 104431 23686352 ~ 23687016 (+) False G52569
TU70175 lncRNA upstream 104431 23686438 ~ 23687016 (+) False G52569
TU70102 lncRNA upstream 343890 23447353 ~ 23447557 (+) True G52509
TU70245 lncRNA downstream 23286 23837692 ~ 23837962 (+) True G52611
TU70294 lncRNA downstream 195390 24009796 ~ 24011101 (+) True G52628
TU70296 lncRNA downstream 198557 24012963 ~ 24013301 (+) True G52629
TU70381 lncRNA downstream 246657 24061063 ~ 24073977 (+) False LOC120558580
XR_005639153.1 lncRNA downstream 246686 24061092 ~ 24074008 (+) True LOC120558580
XM_039801840.1 mRNA upstream 2354 23770631 ~ 23789093 (+) True pik3cd
XM_039801841.1 mRNA upstream 2354 23770631 ~ 23789093 (+) False pik3cd
XM_039800770.1 mRNA upstream 26282 23746365 ~ 23765165 (+) True tmem201
XM_039800771.1 mRNA upstream 34279 23746365 ~ 23757168 (+) False tmem201
XM_039799492.1 mRNA upstream 45981 23744072 ~ 23745466 (+) True foxl2l
XM_039799300.1 mRNA downstream 35208 23849614 ~ 23890973 (+) True clstn1
XM_039799303.1 mRNA downstream 35209 23849615 ~ 23890973 (+) False clstn1
XM_039799301.1 mRNA downstream 35209 23849615 ~ 23890973 (+) False clstn1
XM_039799304.1 mRNA downstream 35209 23849615 ~ 23890973 (+) False clstn1
XM_039799306.1 mRNA downstream 79807 23894213 ~ 23904039 (+) False nmnat1
TU70197 other upstream 26294 23759234 ~ 23765153 (+) False tmem201
TU69870 other upstream 944509 22842066 ~ 22846938 (+) False lamtor5
XR_005639388.1 other upstream 1228926 22562154 ~ 22562521 (+) True LOC120559933
TU69718 other upstream 1231119 22556329 ~ 22560328 (+) True G52210
TU69473 other upstream 1696557 22093905 ~ 22094890 (+) False LOC120558641
TU70648 other downstream 1139036 24953442 ~ 24957330 (+) True G52871
TU70864 other downstream 1929204 25743610 ~ 25748317 (+) True tprg1l
TU70970 other downstream 2257179 26071585 ~ 26076664 (+) False G53096
TU71155 other downstream 2538054 26352460 ~ 26353463 (+) True G53232
XR_005639211.1 other downstream 2565270 26379676 ~ 26382295 (+) True LOC120559113

Expression Profile