RNA id: TU70232


Basic Information

Item Value
RNA id TU70232
length 1075
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G52604
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 23789448 ~ 23790522 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aatacaggaatagtttgacattgtaatacacttatttgctttcttgagaaggtctagaccactctcgTGTCCATCTGTTAAATGTGACGCAGGAGTCAGCAATCTTTAGCGTATCATAACTTAGCTTAGGTTAAGACTTGAAACAGGGAAACAGCTACCTGACTCTGTTTGAATGTGACAAAATCTGCCtataccagcacctctaaagcttatTAATCAATGctttatatcttttttgtttaaGCAAAGATATCAAATAGATGTTTGGTCAAAGGCTCAGAAGAATTATATTGAAAACATGAGGCATTACAACCCAAATAATAATCTCATATTAGCCATAGACTTGTGGTTGCATTTCTCAAAATATGCTCTTTTGAAAGTGTTCTATCTCAGATgatgcagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttattttctgatatttaagtTGTGCACTGTGATTTGTATTGCATTTTTTGAACTGATGTTCCATGGGAGAAATGTCATGTTTGTACTGTCAAACACCTCTATACTTGTTTGCTGTATGATTTCATTTTATGGTGCGTTCAGAATACTTTACATGCTGTATTTCTTGCTGTCATTCATGCAAAGAAGATGATGTGATGTTCATcgcctttttattttgcattacaGTTCAGACGATCTCTACCATTGCATTTCGGTACAATGACTTTTACAGAACAGCAAGTGCAGCTGTGGATTACACAGCAAGACGTTTTACTTTCCTTGTAAGATACTGAAATATTCACTATGGAACAAGCTTTAAATATGTCACTCAGTATGGGCTCAGCTAAGTATTGCTGCTTTAAGCCAGAAGGAGTGAGTCTATTGAGTTTATGAGCTACTTTGCCAATTGTAAAATATACTGCAGTTGCCTTTTGAATTGATTGTAATTCATGAATTCTTTTAAATGGtacaaacattttaacattaaggcCTCATTTACATGTGTGCAGCTAAAACTAATAAATCATCCTGT

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70181 lncRNA upstream 102087 23686438 ~ 23687361 (+) True G52569
TU70174 lncRNA upstream 102432 23686352 ~ 23687016 (+) False G52569
TU70175 lncRNA upstream 102432 23686438 ~ 23687016 (+) False G52569
TU70102 lncRNA upstream 341891 23447353 ~ 23447557 (+) True G52509
TU70058 lncRNA upstream 514253 23265231 ~ 23275195 (+) True LOC120558323
TU70233 lncRNA downstream 957 23791479 ~ 23800868 (+) False ctnnbip1
TU70231 lncRNA downstream 23610 23814132 ~ 23814406 (+) False ctnnbip1
TU70245 lncRNA downstream 47170 23837692 ~ 23837962 (+) True G52611
TU70294 lncRNA downstream 219274 24009796 ~ 24011101 (+) True G52628
TU70296 lncRNA downstream 222441 24012963 ~ 24013301 (+) True G52629
XM_039801840.1 mRNA upstream 355 23770631 ~ 23789093 (+) True pik3cd
XM_039801841.1 mRNA upstream 355 23770631 ~ 23789093 (+) False pik3cd
XM_039800770.1 mRNA upstream 24283 23746365 ~ 23765165 (+) True tmem201
XM_039800771.1 mRNA upstream 32280 23746365 ~ 23757168 (+) False tmem201
XM_039799492.1 mRNA upstream 43982 23744072 ~ 23745466 (+) True foxl2l
XM_039801523.1 mRNA downstream 925 23791447 ~ 23814406 (+) True ctnnbip1
XM_039799300.1 mRNA downstream 59092 23849614 ~ 23890973 (+) True clstn1
XM_039799303.1 mRNA downstream 59093 23849615 ~ 23890973 (+) False clstn1
XM_039799301.1 mRNA downstream 59093 23849615 ~ 23890973 (+) False clstn1
XM_039799304.1 mRNA downstream 59093 23849615 ~ 23890973 (+) False clstn1
TU70197 other upstream 24295 23759234 ~ 23765153 (+) False tmem201
TU69870 other upstream 942510 22842066 ~ 22846938 (+) False lamtor5
XR_005639388.1 other upstream 1226927 22562154 ~ 22562521 (+) True LOC120559933
TU69718 other upstream 1229120 22556329 ~ 22560328 (+) True G52210
TU69473 other upstream 1694558 22093905 ~ 22094890 (+) False LOC120558641
TU70648 other downstream 1162920 24953442 ~ 24957330 (+) True G52871
TU70864 other downstream 1953088 25743610 ~ 25748317 (+) True tprg1l
TU70970 other downstream 2281063 26071585 ~ 26076664 (+) False G53096
TU71155 other downstream 2561938 26352460 ~ 26353463 (+) True G53232
XR_005639211.1 other downstream 2589154 26379676 ~ 26382295 (+) True LOC120559113

Expression Profile