RNA id: TU70381


Basic Information

Item Value
RNA id TU70381
length 301
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC120558580
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 24061063 ~ 24074008 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTCAATTAAGGACTCCTCTTCCCACTTGGAGCCGGTCTCCAGGGCAGATCTTCCGGGCGACTCGCCCTATAAGAAATTAGAAAATGCTACAATAAAACccgaaaaacatttaaaaaaaatgtggcaACTTTATTAATGAAAGCTCGTGCGCTATCCACCGTAAACACACACGCCCCTTTAGTTGGAAGTCACCGATAGACAGCGAAGTACCTCAGATCATTCATGGAAAGCCATCTTCTATATTAAAAATGCCACTGCTAGTACAACACAAGTGCCACTGAAGACCTCTGTGATTCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70296 lncRNA upstream 47762 24012963 ~ 24013301 (+) True G52629
TU70294 lncRNA upstream 49962 24009796 ~ 24011101 (+) True G52628
TU70245 lncRNA upstream 223101 23837692 ~ 23837962 (+) True G52611
TU70231 lncRNA upstream 246657 23814132 ~ 23814406 (+) False ctnnbip1
TU70233 lncRNA upstream 260195 23791479 ~ 23800868 (+) False ctnnbip1
TU70416 lncRNA downstream 196144 24270121 ~ 24274036 (+) True G52728
TU70439 lncRNA downstream 286829 24360806 ~ 24362267 (+) True G52742
TU70454 lncRNA downstream 313176 24387153 ~ 24390127 (+) True G52756
TU70570 lncRNA downstream 631561 24705538 ~ 24705906 (+) True G52817
TU70586 lncRNA downstream 677918 24751895 ~ 24753180 (+) True G52827
XM_039800998.1 mRNA upstream 40139 24013889 ~ 24020924 (+) True c5h1orf127
XM_039800999.1 mRNA upstream 40139 24013889 ~ 24020924 (+) False c5h1orf127
XM_039801000.1 mRNA upstream 40139 24013889 ~ 24020924 (+) False c5h1orf127
XM_039801001.1 mRNA upstream 41065 24013889 ~ 24019998 (+) False c5h1orf127
XM_039801310.1 mRNA upstream 59627 23994946 ~ 24001436 (+) True pgd
XM_039799625.1 mRNA downstream 130398 24204375 ~ 24253787 (+) True casz1
XM_039801878.1 mRNA downstream 251284 24325261 ~ 24334067 (+) True dffa
XM_039800437.1 mRNA downstream 368911 24442888 ~ 24497151 (+) True LOC120559012
XM_039800278.1 mRNA downstream 485430 24559407 ~ 24630995 (+) True cntn3a.1
XM_039801005.1 mRNA downstream 636806 24710783 ~ 24715633 (+) True ttll9
TU70197 other upstream 295910 23759234 ~ 23765153 (+) False tmem201
TU69870 other upstream 1214125 22842066 ~ 22846938 (+) False lamtor5
XR_005639388.1 other upstream 1498542 22562154 ~ 22562521 (+) True LOC120559933
TU69718 other upstream 1500735 22556329 ~ 22560328 (+) True G52210
TU69473 other upstream 1966173 22093905 ~ 22094890 (+) False LOC120558641
TU70648 other downstream 879465 24953442 ~ 24957330 (+) True G52871
TU70864 other downstream 1669633 25743610 ~ 25748317 (+) True tprg1l
TU70970 other downstream 1997608 26071585 ~ 26076664 (+) False G53096
TU71155 other downstream 2278483 26352460 ~ 26353463 (+) True G53232
XR_005639211.1 other downstream 2305699 26379676 ~ 26382295 (+) True LOC120559113

Expression Profile