RNA id: TU70439


Basic Information

Item Value
RNA id TU70439
length 1372
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G52742
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 24360806 ~ 24362267 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cACCACATACATTTTAATGATATCAAAATTTGAAGCCAGAACAAAATTAAGCAAAGTAGCCCTGCATTACATTGTCATTTTGTGCAATACAGAAGCATATGTCTGAGTAAAACTGGCAGTGGCTGAATGCACACAGATCTCACATAACCATTTTATGTTACCAATTTATTACAGTTCttataaaagtcataaattCATTGCTCAGGTATTTGACACCATTTCTCAACCGATTCTAAGTAGACTTGTAACAGGTACTAACTGAAGATGTTTGACCATGTAATGACTCCGCATACAGGCTCACCACAGTCCAAGCCTACCACAGGTAGTCAATACCCAATACAGAAAGTTAATCACTGCATAATTAATTTACATTTCCCACATTGCAAAGCTCCAGTGCAATTTTACATGTTTgcttaatttgcattttaaaacTGTAACAAATAATTCCATATCAAATTGATAAGTCAAAGCTGAGCAGATTTATTTAATGTTAAattggtgattttttttaaaagggacaCTTTTCTCAACTATTGACACTTAGAGCTTTCTTCTAGGCCACTATATGTGCCCGGTACACTTTAATAGATACAtaacaagtcttttttttttttaaatcaacaacAACCAATTTCAGGCACTATAGGGTTCATGTGTATAGAGGACACATTAGTATTCTGAATATACAGTCATGACATGATGGCAACTGTGTATTTTCCTATGAGCACAAACCGATATTAAATATTACACATAAAAGTACAGCAATACATTACATGTACAACCTCTATGTGGTATGTAATGTATTACATAATGTGTAGATGCATTGAATCCGATAGACAGTACACAGTTTCAGAGTGAGGTCAGATTTGACGGCAATGCTCTTCCCCACTCAGCCCAGCCCATTAAATTGCTCTCCGCAAAACGCTGATAAAACAATTACAgagtaaaaatgacaaaaaaaacaaaaaacaaccatacatcagtaaaataaataaaaacaccaagAGCGTGTAAGACTGGAAGGAAGAAAACATTGGAACAAACACTTTCACTGTATCACTCAGTGCATTCCCACCCACTGATTATTAGGTACCCCCAGCCCTAAAATCTTTAGGAGGCTACTCTCTTCAGTGGTGCTGAACTGCGTTGAGGAGGTGAAGAAGCCGTAGAACAAGGTTGTTGATCTGTGGTCTGAGTGCCAGCTAGAGGTTGAACATAGTGGTATGTTGTTTTTGGTCATGCTTCATTGAGTACCTTTTTGCAAACTCAGGCAGGACGAAGGATGCTTTGTGAATTTCAGGGTTGTAATATCTAAGGTTCATATTTTCCATTTCTTCTTTTGACAGCGCTCTCATTGGTTCCATGAAATTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70416 lncRNA upstream 86770 24270121 ~ 24274036 (+) True G52728
XR_005639153.1 lncRNA upstream 286798 24061092 ~ 24074008 (+) True LOC120558580
TU70381 lncRNA upstream 286829 24061063 ~ 24073977 (+) False LOC120558580
TU70296 lncRNA upstream 347505 24012963 ~ 24013301 (+) True G52629
TU70294 lncRNA upstream 349705 24009796 ~ 24011101 (+) True G52628
TU70454 lncRNA downstream 24886 24387153 ~ 24390127 (+) True G52756
TU70570 lncRNA downstream 343271 24705538 ~ 24705906 (+) True G52817
TU70586 lncRNA downstream 389628 24751895 ~ 24753180 (+) True G52827
TU70634 lncRNA downstream 578528 24940795 ~ 24945151 (+) False LOC120559118
TU70635 lncRNA downstream 579973 24942240 ~ 24945151 (+) True LOC120559118
XM_039801878.1 mRNA upstream 26739 24325261 ~ 24334067 (+) True dffa
XM_039799625.1 mRNA upstream 107019 24204375 ~ 24253787 (+) True casz1
XM_039800998.1 mRNA upstream 339882 24013889 ~ 24020924 (+) True c5h1orf127
XM_039800437.1 mRNA downstream 80621 24442888 ~ 24497151 (+) True LOC120559012
XM_039800278.1 mRNA downstream 197140 24559407 ~ 24630995 (+) True cntn3a.1
XM_039801005.1 mRNA downstream 348516 24710783 ~ 24715633 (+) True ttll9
XM_039801006.1 mRNA downstream 357508 24719775 ~ 24721848 (+) True ppp1r3da
XM_039801539.1 mRNA downstream 360022 24722289 ~ 24750342 (+) True sycp2
TU70197 other upstream 595653 23759234 ~ 23765153 (+) False tmem201
TU69870 other upstream 1513868 22842066 ~ 22846938 (+) False lamtor5
XR_005639388.1 other upstream 1798285 22562154 ~ 22562521 (+) True LOC120559933
TU69718 other upstream 1800478 22556329 ~ 22560328 (+) True G52210
TU69473 other upstream 2265916 22093905 ~ 22094890 (+) False LOC120558641
TU70648 other downstream 591175 24953442 ~ 24957330 (+) True G52871
TU70864 other downstream 1381343 25743610 ~ 25748317 (+) True tprg1l
TU70970 other downstream 1709318 26071585 ~ 26076664 (+) False G53096
TU71155 other downstream 1990193 26352460 ~ 26353463 (+) True G53232
XR_005639211.1 other downstream 2017409 26379676 ~ 26382295 (+) True LOC120559113

Expression Profile