RNA id: XM_039800575.1


Basic Information

Item Value
RNA id XM_039800575.1
length 1841
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC120559118
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 24940795 ~ 24945320 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTGCATTCCCCTCCTCTCAGCCAACAGGGATTCTCCCATATTCAGGCTGATTACCAGAACAGTGTCGGGGGCTCACAGTCTCCAGGGGCCCCTAACCCAGTGCACGGCCAGAACCCTGACTGGGACAGCGAGTACTGCAACAGGGACTGTGGACCCAACCACTGCAGcaGTGGCATGGGAGCTCGGGACAAGCCTCTCTACCTCACTTGAAGTTGAAAGACCTCCAAATGTCAGACTCCAGGGAGCGTTCCACCATAACAACAACGTCATCGATGTATCTGCTTTTAcaccattttgtttttctttttttttgtgacggATTTCGAAAATCCCAAAGACTGCTACAGTAACTTCACCTATTTGCCAAGCACTTAGATCGGCCAGAAGCCTGAGGCACTTCTCTTGCATTTTTTTCTCTTGCTTTTTTCCTTATCAGCGAACTTTCCATTTTTCTGTGGGGGCAGTGAGCTTTAAGCTCATGCCAACATACTGGAAAtgaagaccaaaaaaaaaaagtcttcttaTTCTCTTTTGAATTTTTTAAAGatgctctctctcctcttcactcCATTACTCTGTGTTTGCCATGGACTGCCCTCATTGGGGAGATGAAATGCTCTAAGCATACTCAAAGCGTAGGGGTCTTGGGGTAGAAAAGCTAATGCAGGAAACTAGAATATAGTCACCTCAGCAGGGGTGGATGTACTTCAGGACAGACTGAAACACCCCGACTGAGTAAAAGCAAAGTGAAATCATAATGAAGATAGTCACATACACTTAAGACATTTGTAAATCATCCTCGCCCCCTAGTAAAGGACTccctcttttcctttctttctcacaGAGTGATTGTAAATATCACCAAAATTGATCCCTCTTATCTGTGTATTTAGCTGCAGTCccttgctttctttttttaaaacattacttttgtttggttttgtgaCTTTCGTGCAGGCGGATTCAGTGAGGGAATACACACACTAAAAGTTGTGTGGCAACTGTGTTCACTGGTCTTGTTTCTCTATAAACGAGAGAGAAATGCAAAGACTGTAAAACGCTCCATTTCCTCCTTAACTGGCGGAGCTCTGATAGAGAGTGTCACTCTCGTCACATGGCCTCAGGACGTTACAGAACTGTAGAGGTCAAAGGTTGATACCTCTCCTTTTAGCTCATCCTCCTCTTGGTCAATAAggaccgcccccccccccacctgtaACCCCGCCCACCTACCCTTAGTCCTGACACCACTTGTACaggtgaattaaaaaaaaaaaagttgctaaatgtgaaatgttactaaagaaaaaaaaacataacagtgGGTTTTAAAGTTTTTGACTAGTTTTATTAGGTGTTTTAGAATTGTGTTGAACTTATCTTTATCattttttgtgaagacaaaaaaattctgaagatattttgttttttcattgtaGCAGGATTTGCGTTTCGGAGGAACAGTCATGGGGGTAGATATTTTAAGTTTGTGTATAAACCTGCCAAATGTACTTCTTTAATTTGTAAAGCCAGTGATGAGAGAacccattttgttttgttgaaaaTCACATGTTTTACAATATGGTCATTCTATTTAATTTGGTTGCAGTTTTCACATCTATTTATGAATGATATGAAGTAACGTTTTGGCTTATTTTTCATCAGggtgcattattattattataattattgatcaAACAACATGATTATtagaataataaatattttttcagaAATTGTTGTTGGTGCAATACAAGTGTACCAGCATTAGATTCATTTTGAGTCACAAAtacttcttttgttttcttttgtctgtaataaaatgtttaaagtgGAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70586 lncRNA upstream 187615 24751895 ~ 24753180 (+) True G52827
TU70570 lncRNA upstream 234889 24705538 ~ 24705906 (+) True G52817
TU70454 lncRNA upstream 550668 24387153 ~ 24390127 (+) True G52756
TU70439 lncRNA upstream 578528 24360806 ~ 24362267 (+) True G52742
TU70416 lncRNA upstream 666759 24270121 ~ 24274036 (+) True G52728
TU70673 lncRNA downstream 14496 24959816 ~ 24960103 (+) True G52892
XR_005639163.1 lncRNA downstream 64669 25009989 ~ 25015398 (+) True LOC120558677
TU70912 lncRNA downstream 864393 25809713 ~ 25811047 (+) True G53056
XR_005639231.1 lncRNA downstream 1049913 25995233 ~ 25997094 (+) True LOC120559215
TU70971 lncRNA downstream 1126265 26071585 ~ 26076664 (+) False G53096
XM_039800571.1 mRNA upstream 21029 24838584 ~ 24919766 (+) True LOC120559115
XM_039800572.1 mRNA upstream 21029 24838584 ~ 24919766 (+) False LOC120559115
XM_039800573.1 mRNA upstream 21029 24838584 ~ 24919766 (+) False LOC120559115
XM_039800574.1 mRNA upstream 21029 24890538 ~ 24919766 (+) False LOC120559115
XM_039801796.1 mRNA upstream 147693 24785963 ~ 24793102 (+) True pigt
XM_039799789.1 mRNA downstream 45574 24990894 ~ 24999555 (+) True alas2
XM_039799801.1 mRNA downstream 77305 25022625 ~ 25034515 (+) False znf362b
XM_039799799.1 mRNA downstream 77306 25022626 ~ 25034515 (+) False znf362b
XM_039799803.1 mRNA downstream 77306 25022626 ~ 25034515 (+) False znf362b
XM_039799802.1 mRNA downstream 77471 25022791 ~ 25034515 (+) False znf362b
TU70197 other upstream 1175642 23759234 ~ 23765153 (+) False tmem201
TU69870 other upstream 2093857 22842066 ~ 22846938 (+) False lamtor5
XR_005639388.1 other upstream 2378274 22562154 ~ 22562521 (+) True LOC120559933
TU69718 other upstream 2380467 22556329 ~ 22560328 (+) True G52210
TU69473 other upstream 2845905 22093905 ~ 22094890 (+) False LOC120558641
TU70648 other downstream 8122 24953442 ~ 24957330 (+) True G52871
TU70864 other downstream 798290 25743610 ~ 25748317 (+) True tprg1l
TU70970 other downstream 1126265 26071585 ~ 26076664 (+) False G53096
TU71155 other downstream 1407140 26352460 ~ 26353463 (+) True G53232
XR_005639211.1 other downstream 1434356 26379676 ~ 26382295 (+) True LOC120559113

Expression Profile