RNA id: TCONS_00074969


Basic Information

Item Value
RNA id TCONS_00074969
length 796
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id XLOC_037712
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 15769269 ~ 15778131 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTGATGAccactttataaacacaacacctaggataatttaggagctttttattgtaataaaatgccttttgaatgacacagatttttatgttggctaggtgatgacagtaagtaacggTACTGTGATCTTTCTGGGGTGTTAACTGTAAAGCAGTAAGTAGTATTTTACTCTTGTATTTCTTAAGTTTGTTCATGGATTTTTGTGACAATACTTTGATGCATAAGTGTTGAATTCAGcttctaacaatgtttttttttaatcaaaatatatacaataattgtcctgctctgcatgtacattttgtttagctgtacatctgtacattgaatagcaaatgttattaatttactatgagcattttacattctagACGTGATTTGAGATATCTTTAATTAATCCTGTATGTAAGGGTCGTTTCATGCTAACGGAAATGTCTGAGCTAAGGCTAATTCCAACCTAATCATCTtcgactgcaaaaagaaaaagtttgaccACCGTTTTATGTGACACCCtggataattattatcatttaggagtatttttgtgatatagtgacttttggctaacatgatctttttttacttaattttgcttaaacgcttttatctgttattctttttcagatggataattgcgtgaaaatcaaactaaaagaatgcaatcttgaggagttaatccccacatttgaagcacagGAGCGAACCTTTCCTCGTTTTTAGGTCAATTTGAATACAATTCAGAGGGTAAGGATTCAATTAAAGGTTTCTCGATGcataatgatgcatttaatgca

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0001707 mesoderm formation biological_process
GO:0001708 cell fate specification biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0010646 regulation of cell communication biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0001756 somitogenesis biological_process
GO:0001757 somite specification biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0035282 segmentation biological_process
GO:0003401 axis elongation biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0035295 tube development biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0045165 cell fate commitment biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0030509 BMP signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0010470 regulation of gastrulation biological_process
GO:2000027 regulation of animal organ morphogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0023051 regulation of signaling biological_process
GO:0009966 regulation of signal transduction biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0007379 segment specification biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0060026 convergent extension biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0072045 convergent extension involved in nephron morphogenesis biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0071772 response to BMP biological_process
GO:0071773 cellular response to BMP stimulus biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074964 lncRNA downstream 245289 15517348 ~ 15530719 (-) True XLOC_037709
TCONS_00074048 lncRNA downstream 351369 15398425 ~ 15424639 (-) True XLOC_037708
TCONS_00074040 lncRNA downstream 1423226 14303895 ~ 14352782 (-) True XLOC_037703
TCONS_00075323 lncRNA downstream 1423244 14303895 ~ 14352764 (-) False XLOC_037703
TCONS_00074052 lncRNA upstream 7645 15785246 ~ 15786445 (-) False XLOC_037713
TCONS_00075325 lncRNA upstream 120872 15898473 ~ 15912408 (-) False XLOC_037714
TCONS_00074971 lncRNA upstream 121877 15899478 ~ 15899886 (-) True XLOC_037714
TCONS_00074057 lncRNA upstream 329505 16107106 ~ 16108997 (-) True XLOC_037716
TCONS_00074060 lncRNA upstream 351718 16129319 ~ 16133460 (-) False XLOC_037717
TCONS_00074046 mRNA downstream 351369 15362300 ~ 15424639 (-) False XLOC_037708
TCONS_00074047 mRNA downstream 413452 15362401 ~ 15362556 (-) False XLOC_037708
TCONS_00074044 mRNA downstream 567879 15014891 ~ 15208129 (-) False XLOC_037707
TCONS_00074045 mRNA downstream 567879 15143117 ~ 15208129 (-) True XLOC_037707
TCONS_00074043 mRNA downstream 783278 14800641 ~ 14992730 (-) True XLOC_037706
TCONS_00074053 mRNA upstream 8514 15786115 ~ 15789526 (-) True XLOC_037713
TCONS_00074055 mRNA upstream 158615 15936216 ~ 16062938 (-) True XLOC_037715
TCONS_00074056 mRNA upstream 320211 16097812 ~ 16109001 (-) False XLOC_037716
TCONS_00074058 mRNA upstream 349608 16127209 ~ 16239130 (-) False XLOC_037717
TCONS_00074059 mRNA upstream 351438 16129039 ~ 16133263 (-) False XLOC_037717
TCONS_00074050 other downstream 86949 15685746 ~ 15689059 (-) True XLOC_037711
TCONS_00074049 other downstream 203845 15570343 ~ 15572163 (-) True XLOC_037710
TCONS_00074033 other downstream 1667128 14093241 ~ 14108880 (-) True XLOC_037700
TCONS_00074026 other downstream 1922609 13839742 ~ 13853399 (-) True XLOC_037696
TCONS_00074018 other downstream 2888150 12885752 ~ 12887858 (-) True XLOC_037687
TCONS_00074051 other upstream 4447 15782048 ~ 15789364 (-) False XLOC_037713
TCONS_00074054 other upstream 120872 15898473 ~ 15899553 (-) False XLOC_037714
TCONS_00074065 other upstream 1045684 16823285 ~ 16824175 (-) True XLOC_037719
TCONS_00074071 other upstream 1637640 17415241 ~ 17417628 (-) False XLOC_037723
TCONS_00074078 other upstream 2544982 18322583 ~ 18374185 (-) True XLOC_037727

Expression Profile

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