RNA id: XM_039801395.1


Basic Information

Item Value
RNA id XM_039801395.1
length 3068
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC120559571
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 26483532 ~ 26537351 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cctccttccttcccgtctctctctccctccgctGCTAACCAACAGTTAGCACTAGCACGTTAGCCTCCAGCAGCTGTCGGTGGCAGTCAGTCCGAGTGGTGGTGCATTTGtaatcatcctcctcctcctcctctcccgtAGATAGACCGTGGACGGCCAGGTTGTTTCTTCGGGAGCCAGCTGCTTCACCTCCTCGGGCTACCTGCAGTAAAATTGTGTTGTCCTCGTCGTCACGACAGGAAGAAGCCCTGGGACATGGCCAGACCAGAACAAGTACTGGTGCTAGAGCCACAACACGAACTGAAATTCAGAGGCCCGTTTACAGATGTCGTCACTGCCACTCTGAAGCTCACCAACCCCACAGATAGAAATGTGTGTTTCAAAGTCAAGACAACCGCGCCTCGCAGATACTGTGTGCGCCCAAACAGTGGCGTTATTGATGCTGGAAACTCCGTCAATGTTTCTGTTATGCTACAGCCGTTTGACTACGACCCCAATGAAAAGAGTAAACACAAATTCATGGTGCAGTCCATGCTGGCTCCATACGACATGACTGACATGGAAGGAGTTTGGAAGGAGGCAAAGCCTGACGAGCTGATGGATTCAAAGTTGAGATGTGCATTTGAGATGCCTGTAGAAAATGACAAAACTACTGAGCTCTCCACGCTGCCCAAGTCAGCCAGTGCCTCGCTGGATGACGGCGAGGTGAAGAAGATCATGGAGGAGTGCAAGCGGCTGCAGATGGAGGTGCAGAGGCTAcgggaagaaaacaaacagatcAGGGAGGACGACGGGCTAAGGAAGAGAAAGGTGACCTCAATGGGCGCGCCttactcttcttcctcctccgcCATGGCCACCTCTGCCATGAGGGACGAAGGCCTAAGCACCCGCATCCTGGCGCTCTGCGTGCTCTTCTTTGTCATTGGAGTCATCATTGGCAAGCTGGCCCTgtagagacacagacagtgaCAGACGGGCGGATGGCGTGCTCGGGAGGACATGTGTCAATGACGGCAACGAGGATGTCTTCTGGGTTTATGTtgatttctctttctttttaacatttaagGCAATATCACAATGGTTTGTCTGGATGGAAAATGATTTAACGTGTAAAAAGAGAACGAAGGAAGGCGATCCCTAGTGAAACCATGTGCGAGCGTTTTTGTCACAGGTCTTgccttttttttgtgaaataatcaCCACCTCTGATCTGTTCTTCTCTGTCCATCCCTCCTTCCTAAATGATCTTCCGCATCTTGCACAGGTAACAGTTAGTTGTGTGTGGAAGTGGCTTCATGCTGGCTGAATGTCAAAAGTCTTTCATTGATTCTTCTTTTGATTCTTAAGTCTTCAAGTTCCTCACTCACATTGTCTATAAAAAAGATCTAACACTCCTCTTCTGATAATCTCTCTTCCACTTATTACTGCTAATCTGCAAAGAGAGGTGAACAGTAATCagtgaaaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacgatgAAATCACAGGCTGTTTAAGAGCGGAGGAAGAGGGGtgatttgaaaacaaaatgtaatctAAACAGATTTCCTGTacacaacagaaaaatgggGGGTCTTTGTTGGAAATCAGTTTAAAACTTGATCATGTTTGTCGCTTACTGGCCCAAGGAATCAGTAGAAATCcaataaatcaatttttttggccatttgtGAAATTATAACCTGGTACGCATCAAGATATGGATAAGAATTTATGCTGCACGATGAtgtagttaaaaaaacaaagctgtAATATTTAGTAAAAGACATCAGATTTTTCTAGTTCACATTTTTACTTGTCTTGATACTTCATCAGTTTGAGAGAGGCAGCCCCCTGGACATTTTCAATatataacatacagtatgtaacaaTAGCTTTGGCCACCTTGTTTAATTTTGCCCATGGAGTATTGTATTTGCGTCCTCTAGTGTATTACAGCAGCtgtttgcctttttttcttATCATGTAGCCACAATGCTTCTGTTGTTTATAATATTCAAATGCACTATATTCAAGTGTCCACTCTGCATGAAATGACCTGgatttattatgattattattctcttttcttttttgagtGTTGAAGTTTATtggcaaaacaaaaaagacataCCGTCTTCTTAAAAGGGACCAtcgtgggtgtgtgcgtgtgagagagagagagagagagagagagagagagtgagtgtgtgagtgagtgtgtgtgagagagagattatctttttcttttgtttcctgtTGGGCTCTGGTGGTCGTGCGGTAACTGAGACAACACAGCTGTATTATCTCGGCTGTCTCATGACCATCTAAGCAGGTtgttcaagaaaaaaaaaaagaataaatatctGTATTTTTCGTTGCCTGAGGGAGCTCTGGGAGCAGAGAAGTGGGAATGTGGATGTCTGGGAGGAGGACTGACCTGTGAATACACACTacattaaagaagaaaaaaaaaacgacattagCGCTTCAGACCACACATGCAAAGATACAGTCACACAGCAATGTAATCACACAGTAATTGGATACTCTTTTGTATGTACATAAAAATATAACTGGCAAAGTTATTAACATACTGTAGTaaaggaagaaaataaacaacCAACATGGATCATGTAGCATCATAatgaattaaaatatataaattccccccccccatccccaaCTGTCTGCTTCTGTGAAAAGCTTGCACTTTTTTGGTATTTAATTCTAAATTTAAAACGAGATTGTAAGGTGTGTGCCAAAAAGAAATTTCAGATAGTAAGTAACGGAGCAAATATCTGGGGTGCAGAAACACTAAGCTGTTGCTCTAAATTAGTGGTTATCCAgtgctgaaataaaatgtaactgCTCTTTGTATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71207 lncRNA upstream 4643 26497766 ~ 26523887 (+) False gnas
TU71196 lncRNA upstream 83640 26443092 ~ 26444890 (+) True atp5f1e
XR_005639369.1 lncRNA upstream 105471 26414885 ~ 26423059 (+) True LOC120559830
TU71179 lncRNA upstream 126102 26397199 ~ 26402428 (+) True G53248
TU71166 lncRNA upstream 163693 26364442 ~ 26364837 (+) True G53239
TU71235 lncRNA downstream 89945 26627296 ~ 26631607 (+) True G53285
TU71414 lncRNA downstream 283310 26820661 ~ 26823621 (+) True G53418
TU71454 lncRNA downstream 452478 26989829 ~ 26993682 (+) False G53445
TU71455 lncRNA downstream 452478 26989829 ~ 26993682 (+) True G53445
TU71466 lncRNA downstream 600780 27138131 ~ 27202849 (+) False G53455
XM_039801748.1 mRNA upstream 4642 26490442 ~ 26523888 (+) True gnas
XM_039801747.1 mRNA upstream 83693 26443050 ~ 26444837 (+) False atp5f1e
XM_039801745.1 mRNA upstream 93066 26428478 ~ 26435464 (+) True bpifcl
XM_039801743.1 mRNA upstream 100778 26424113 ~ 26427752 (+) True LOC120559752
XM_039800567.1 mRNA upstream 134797 26383591 ~ 26393733 (+) True LOC120559112
XM_039801795.1 mRNA downstream 2549 26539900 ~ 26546310 (+) True LOC120559781
XM_039801580.1 mRNA downstream 9805 26547156 ~ 26553116 (+) True eif2s2
XM_039801392.1 mRNA downstream 16508 26553859 ~ 26558935 (+) True LOC120559568
XM_039801963.1 mRNA downstream 21910 26559261 ~ 26577079 (+) False l3mbtl1
XM_039801965.1 mRNA downstream 21910 26559261 ~ 26577079 (+) False l3mbtl1
XR_005639211.1 other upstream 146235 26379676 ~ 26382295 (+) True LOC120559113
XR_005639212.1 other upstream 146235 26379676 ~ 26382295 (+) False LOC120559113
TU71155 other upstream 175067 26352460 ~ 26353463 (+) True G53232
TU70970 other upstream 451866 26071585 ~ 26076664 (+) False G53096
TU70864 other upstream 780213 25743610 ~ 25748317 (+) True tprg1l
TU71269 other downstream 262745 26800096 ~ 26800746 (+) True G53305
XR_005639205.1 other downstream 647143 27184494 ~ 27187943 (+) False si:dkey-20d21.12
TU71506 other downstream 718023 27255374 ~ 27255716 (+) True G53488
unassigned_transcript_230 other downstream 838872 27376223 ~ 27376294 (+) True trnam-cau_2
unassigned_transcript_231 other downstream 841545 27378896 ~ 27378967 (+) True trnam-cau_3

Expression Profile