RNA id: TU72358


Basic Information

Item Value
RNA id TU72358
length 1804
RNA type TUCP
GC content 0.45
exon number 7
gene id cdk11b
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 29752661 ~ 29765873 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATAATCCATGATGGCTACCGTTAGCCAGCTCTATCCATAATAGTTATATAATTGTCAGAAGGTGGCGCTAATAGCCaaattgtgtatatatacaatttGGCTATTATATTGGTATATATACCCCAATGGACGTTAGCATTTGCACTTTGTTTCGCTGACGTTAGCCAGCAATATCGGTTGATATTATTGTGTTTCTTCTGTTTTGTGGAAGCATTTTTCAGTCAAAGTTGAAACGATGGGTAATAGTGGCACTTGCCAGCCCACCCTATTCACTTCAGTAGAATTGACACTAAAGACTGGCGCCAATACAGAATTCTAATGACTATGAATCTTCCTTCTTTCTAAGATTCCTTGTGTTGACCAAGGAAGTAAACTGGAGGTGCATATTGTAACAGTGGGACAAACTGTAAGATTCTAATCAAATTTACTAATGATGATTCAATTTATGACAAcgtacataaaaataaaatggatgataaatggcaaaaaaaacaatgaccaACAAGTGGTAGGGTTTCTCTTTCATTCTGGATCTATTAtaactgtattgtttttttcttctgtgtaAGCCTTACTCTTCATGATTCAAATGAAGCTGAACTTAAATGACGTGGAATGAACACTTGTCttggatgtctgtgtgtgtatgtgtgtggagcAGGCGGTGGAGAGTGGACGCTGATGGGGGACGAAAAGGAGACCTGGAAAGTAAAAACTCTTGACGAAATACTACAGGAGAAAAAACGCAGAAGAGAATTAGAAGAGAGATCAGACCCCAAGCGCCAGAAAAATTTCCCACAGGGCCTTGTTCCACAGTCGGATGATCGGGAAGCCAAACGAGATACTCCGGAGGAAGGAGAACTACGGGATCAAAAGATGGAAATAACAATTCGTAATTCCCCGTACACACGGGAGGACTCAACAGAGGACAGGTCCTTGGAACTGTAGGAAACAAACATCAGTGTATTTTCAAAGTGGATGTAGTATACGTGTTATAGTTTAACAACAAAGtatgtatttcatgtatttAAAAGTGATATGAAACACAGTGTAGCTGGCTATTTAGAGTCTCACAatgttttctttacatttatGCAGGGGCGAGGAAGATGAATCATTAGCAATCAAGCCTCCACAGCAAATGGCAAGAAAAGACAAGTCTCACCACagaaaggaggagaagagaaaagatAAAAGACGTCATCGCAGTCACTCTGCTGAAGGAGCAGGGAAACATGTACGAcccaaagacaaagaaaaagagcGAGAGAATGATCGCAGGAAGCGTCAGTGGGAGGAAGACAAAGCCCGCCGAGACTGGGAGAGGCAGAAACGAAGGGAACAGGCCAGAGCTCATTCACGCAGAGAGAGGGACCGGCTGGAACAGCTGGAGCGCCAGCGTGAACGGGACAGAAAGCTGCGCGAACAGCAGAAAGAGCAACGGGAGCTGAAGGATCGGGAGAGGAGGGCTGAGGAGCGACGCAAAGAGCGAGGTGGTAGGCGAGAAGTGCCGTCTCACCATCGGATGCTACCTGACGAGTATGAGGATAAATCAAAACAAGGTCATCATAGCCGAAGTCCCAACCGCATACCTCGGGAGAGATCCGAACTCAGCGAACCACGGAAAAGTGCGACATCGAAGGAGGAGAAGCCAGAGGGCAAAGACCTGCTCGCAGACCTTCAGGACATCAGTGACAGTGAGAGGAAGACCAGCTCAGGAGAATCCTCCATCGCATCAGCGTCCGGCTCTGATGAAGAGGATGACGATGATGAAGAGGAGTCAAGCAGCCAGAGTGAGGGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639328.1 lncRNA downstream 82270 29676371 ~ 29678804 (-) True LOC120559594
TU72338 lncRNA downstream 82270 29676468 ~ 29678804 (-) False LOC120559594
TU72201 lncRNA downstream 237612 29521790 ~ 29523462 (-) True G54038
TU72165 lncRNA downstream 371511 29388551 ~ 29389563 (-) True G54006
TU72164 lncRNA downstream 375222 29385123 ~ 29385852 (-) True G54005
TU72420 lncRNA upstream 49157 29814350 ~ 29815450 (-) True G54185
TU72424 lncRNA upstream 57327 29822520 ~ 29822817 (-) True G54189
TU72525 lncRNA upstream 135367 29900560 ~ 29902720 (-) True G54272
TU72537 lncRNA upstream 242844 30008037 ~ 30015317 (-) False tafa5l
XR_005639359.1 lncRNA upstream 730847 30496040 ~ 30500331 (-) True LOC120559738
XM_039801708.1 mRNA downstream 21881 29734941 ~ 29739193 (-) True ubiad1
XM_039801706.1 mRNA downstream 32776 29682789 ~ 29728298 (-) False mib2
XM_039801880.1 mRNA upstream 18213 29783406 ~ 29804982 (-) True atp13a2
XM_039801882.1 mRNA upstream 41601 29806794 ~ 29810573 (-) True LOC120559846
XM_039801883.1 mRNA upstream 57679 29822872 ~ 29837527 (-) True tmem240a
XM_039799649.1 mRNA upstream 81689 29846882 ~ 29850954 (-) True bcas2
XM_039800361.1 mRNA upstream 162995 29928188 ~ 29946233 (-) False brpf3b
XR_005639094.1 other downstream 268101 29476009 ~ 29492973 (-) False clcnk
XR_005639350.1 other downstream 2100428 27644783 ~ 27660646 (-) False xpc
XR_005639389.1 other downstream 2562247 27198712 ~ 27198827 (-) True LOC120559934
TU71566 other downstream 2570877 27189076 ~ 27190197 (-) False hyal3
TU71558 other downstream 2589907 27163286 ~ 27171167 (-) False ifrd2
TU72536 other upstream 206003 29971196 ~ 30065918 (-) False tafa5l
TU72538 other upstream 206003 29971196 ~ 30072699 (-) False tafa5l
XR_005639345.1 other upstream 243049 30008242 ~ 30065941 (-) False tafa5l
XR_005639344.1 other upstream 243049 30008242 ~ 30065941 (-) True tafa5l
XR_005639347.1 other upstream 243049 30008242 ~ 30065940 (-) False tafa5l

Expression Profile