RNA id: XM_039800309.1


Basic Information

Item Value
RNA id XM_039800309.1
length 3113
RNA type mRNA
GC content 0.50
exon number 19
gene id cdk11b
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 29752661 ~ 29765873 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTCTGGATCTATTAtaactgtattgtttttttcttctgtgtaAGCCTTACTCTTCATGATTCAAATGAAGCTGAACTTAAATGACGTGGAATGAACACTTGTCttggatgtctgtgtgtgtatgtgtgtggagcAGGCGGTGGAGAGTGGACGCTGATGGGGGACGAAAAGGAGACCTGGAAAGTAAAAACTCTTGACGAAATACTACAGGAGAAAAAACGCAGAAGAGAATTAGAAGAGAGATCAGACCCCAAGCGCCAGAAAAATTTCCCACAGGGCCTTGTTCCACAGTCGGATGATCGGGAAGCCAAACGAGATACTCCGGAGGAAGGAGAACTACGGGATCAAAAGATGGAAATAACAATTCGTAATTCCCCGTACACACGGGAGGACTCAACAGAGGACAGGTCCTTGGAACTGGGCGAGGAAGATGAATCATTAGCAATCAAGCCTCCACAGCAAATGGCAAGAAAAGACAAGTCTCACCACagaaaggaggagaagagaaaagatAAAAGACGTCATCGCAGTCACTCTGCTGAAGGAGCAGGGAAACATGTACGAcccaaagacaaagaaaaagagcGAGAGAATGATCGCAGGAAGCGTCAGTGGGAGGAAGACAAAGCCCGCCGAGACTGGGAGAGGCAGAAACGAAGGGAACAGGCCAGAGCTCATTCACGCAGAGAGAGACCCCGATTGGATTCTCCTGGGTTTTTTTTGGACCACAGGGACCGGCTGGAACAGCTGGAGCGCCAGCGTGAACGGGACAGAAAGCTGCGCGAACAGCAGAAAGAGCAACGGGAGCTGAAGGATCGGGAGAGGAGGGCTGAGGAGCGACGCAAAGAGCGAGGTGGTAGGCGAGAAGTGCCGTCTCACCATCGGATGCTACCTGACGAGTATGAGGATAAATCAAAACAAGGTCATCATAGCCGAAGTCCCAACCGCATACCTCGGGAGAGATCCGAACTCAGCGAACCACGGAAAAGTGCGACATCGAAGGAGGAGAAGCCAGAGGGCAAAGACCTGCTCGCAGACCTTCAGGACATCAGTGACAGTGAGAGGAAGACCAGCTCAGGAGAATCCTCCATCGCATCAGCGTCCGGCTCTGATGAAGAGGATGACGATGATGAAGAGGAGTCAAGCAGCCAGAGTGAGGGCAAGCGAGAGCCGGAGGAGGTCGGCGGCTCGGGCGGAGACGGCAAAGTTCAAGAAGTGGTGCACTGGGCATGGTCAGTGGGAAGGTACGTAGAAGAGAAGGAAAATGGAAATCACATACTTTCAGTGCCAGAGTCCCGTTTCGATCACGACTCAGAAGAGAGCGGTGAGGacatggaggaagaggaggaggaggaggacgaggaggatgCAGGAGATGGTGACCCCACGCCTCACTCTCAAACTCATTCTCGCTCCCCCACCCCCGAAGAGAACTATATCCCAGACTCTCCTCCAATTTCACCTGTGGAGCTGAAAAAGGAGCTGCCCAAATATCTGCCTGCTTTACAGGGTTGTCGCAGTGTTGAGGAATTCCAGTGCTTGAACCGAATAGAAGAGGGAACCTATGGTGTGGTGTACAGAGCCAAGGACAAAAAGACGGATGAAATTGTGGCCTTGAAAAGATTaaagatggagaaggagaaggagggctTCCCCATTACCTCTTTAAGAGAAATCAATACAATCCTGAAAGCTCAGCACCCAAACATCGTCACAGTAAGGGAAATAGTTGTGGGAAGTAATATGGACAAGATCTACATCGTGATGAACTATGTAGAACATGACCTGAAGAGTTTGATGGAAACCATGAAGCAGCCCTTCCTGCCAGGTGAAGTAAAGACTCTGATGATTCAGCTGCTGCGAGGTGTCCGACATCTCCACGATAACTGGATTCTCCATCGTGATCTGAAGACGTCCAATCTGCTGCTGAGCCACAAGGGTATCCTCAAGATTGGCGACTTTGGTTTGGCCCGGGAGTACGGTTCGCCCCTGAAGCCCTACACCCCTGTAGTTGTGACCCTGTGGTACCGATCACCAGAGCTGCTGCTCGGAGCCAAGGAGTACTCCACAGCTGTGGACATGTGGTCAGTGGGCTGCATATTTGGCGAGCTCCTCACCCAGAAACCTCTCTTCCCTGGAAAATCTGAAATTGACCAAATTAACAAGGTTTTTAAGgATCTGGGGTCACCCAGCGAGAAGATCTGGCCTGGCTACGGCGAGCTGCCCGCTGTGAAGAAGATGACTTTTACAGAGTATCCCTACAACAATCTGCGAAAGCGCTTTGGTGCGCTGCTCTCAGATCAAGGCTTTGACCTCATGAACAAATTCCTCACCTACTGCCCCAGTAAGAGGATATTATCGGACGAGGGGCTCAAGCACGAGTACTTTCGCGAGACGCCGTTGCCTATCGAGCCGTCCATGTTCCCCACCTGGCCGGCCAAGAGCGAGCAACAGAGGGTGAAGAGAGGCACCAGTCCTCGTCCACCCGAGGGAGGCCTGGGCTACAGTCACCTGGGCGATGACGACCTCAAAGACACAGGCTTCCACCTGACAACCAGCAACCAGGGAGTGTCGGCAGTCGGTCCAGGATTTAGCCTCAAATTCTGAGCCCAAAACTGCAGGATACCTGGCTGTCGGGAGCAAACAGTTCTGGGACTTGGACGGTGTCACTGGTTTACAGCTGTAAACCAGATCCATATCTGATCAACTACAACTGTTACCAAATAGTCAGGACTGTCTCACAGCAAGACTGGTGGCTCAAACATGTTGAATCTCCCGAATTTTCGCTCGACTTTTTGGCTTGTTCTCTGTATTTTCAAGCCATTTCACCATTTTAAATGTGTCCATTTTAGCTCTTAAATAGGATACGCAACCATACATTTGTTAGAATTGTAGCTCTCATGtttgacttttgttttattttcccttTTATACTTCATGAGAGAGGACCAGATTTTCTAAATGGTTGGTATTTCCTGGCTGCCTGAGCTACTGTATAATGATGCAGCATTGGCTGTGCTTTCCATCCAGCATTATGTGAGAAATTTACTAAGGACTGTCACTTGATGACAGGGAGACGATGTTTTTggtagaaataaagtttgaaaCTTTG

Function

GO:

id name namespace
GO:0007224 smoothened signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08818 CDC2L; cell division cycle 2-like

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639328.1 lncRNA downstream 73857 29676371 ~ 29678804 (-) True LOC120559594
TU72338 lncRNA downstream 73857 29676468 ~ 29678804 (-) False LOC120559594
TU72201 lncRNA downstream 229199 29521790 ~ 29523462 (-) True G54038
TU72165 lncRNA downstream 363098 29388551 ~ 29389563 (-) True G54006
TU72164 lncRNA downstream 366809 29385123 ~ 29385852 (-) True G54005
TU72420 lncRNA upstream 49682 29814350 ~ 29815450 (-) True G54185
TU72424 lncRNA upstream 57852 29822520 ~ 29822817 (-) True G54189
TU72525 lncRNA upstream 135892 29900560 ~ 29902720 (-) True G54272
TU72537 lncRNA upstream 243369 30008037 ~ 30015317 (-) False tafa5l
XR_005639359.1 lncRNA upstream 731372 30496040 ~ 30500331 (-) True LOC120559738
XM_039801708.1 mRNA downstream 13468 29734941 ~ 29739193 (-) True ubiad1
XM_039801705.1 mRNA downstream 20751 29682789 ~ 29731910 (-) False mib2
XM_039801703.1 mRNA downstream 20751 29682789 ~ 29731910 (-) False mib2
XM_039801706.1 mRNA downstream 24363 29682789 ~ 29728298 (-) False mib2
XM_039801702.1 mRNA downstream 26370 29682789 ~ 29726291 (-) False mib2
XM_039801880.1 mRNA upstream 18738 29783406 ~ 29804982 (-) True atp13a2
XM_039801882.1 mRNA upstream 42126 29806794 ~ 29810573 (-) True LOC120559846
XM_039801883.1 mRNA upstream 58204 29822872 ~ 29837527 (-) True tmem240a
XM_039799649.1 mRNA upstream 82214 29846882 ~ 29850954 (-) True bcas2
XM_039800361.1 mRNA upstream 163520 29928188 ~ 29946233 (-) False brpf3b
XR_005639094.1 other downstream 259688 29476009 ~ 29492973 (-) False clcnk
XR_005639350.1 other downstream 2092015 27644783 ~ 27660646 (-) False xpc
XR_005639389.1 other downstream 2553834 27198712 ~ 27198827 (-) True LOC120559934
TU71566 other downstream 2562464 27189076 ~ 27190197 (-) False hyal3
TU71558 other downstream 2581494 27163286 ~ 27171167 (-) False ifrd2
TU72536 other upstream 206528 29971196 ~ 30065918 (-) False tafa5l
TU72538 other upstream 206528 29971196 ~ 30072699 (-) False tafa5l
XR_005639345.1 other upstream 243574 30008242 ~ 30065941 (-) False tafa5l
XR_005639344.1 other upstream 243574 30008242 ~ 30065941 (-) True tafa5l
XR_005639347.1 other upstream 243574 30008242 ~ 30065940 (-) False tafa5l

Expression Profile