RNA id: TU72537


Basic Information

Item Value
RNA id TU72537
length 2781
lncRNA type sense_over
GC content 0.40
exon number 3
gene id tafa5l
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 29971196 ~ 30072699 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aattgagcactgtagtggttatgatcatatcagagactatgtaactacatggaaacagaccaaatgatgcctgtttcttgtaaagtaactagcatTACAGAAGGCTGTAGCCTTGCGCTGAAGccccgtgggaattcagttgtagcaggaaaaggtaaacaacggagcgtagtgtgtgaagagtgaagaacggaggtgttcacaagggaagaagatgggagtaacgtaactatggagctagagctaatcttcagtaacgctattcgTAATAgtattacaagaaacaggcatcatttgttctgtttccatgtagttacatagtcacttaTAGGATCActtcagtgctcaattacctatttatgaggggggaataaacttcaaaatttcgccgtgaaagcatgaactgtcctctggaggacatccaccagaccagcgggcgcctgtggattgttgtcggcagcggcaggcgagggaggcggggaggaagtagaaggatgcccggtcggggctgctagcctggctaaggaaactaccacgcaattcgccactgcagagactcatattcaccaacgacagcacacaaaatggatatactgtatatgctacaaatataaatggaactgctgcgtgatgattattaccggagcctggctgagcacactcactcatcccagacggcagctagcagctaagaggCCTTTGCCCAAGGAGCCATCATAGGTTGCATAGAAAACAGCAAGTATATTCATTGACATCCATGCTACAAAAGGAACTGAGGCCAGTCACTACACCACAATATTGTATCCATATACCAACGAGACTCCCAAACTTTACACCAGGTTTGAccttcagtaaaaaaaaaaattaaaataatccaaagCTTTTCTAATCACCACAGTGAAAGACTCTCGACAGACACTTCTGAGAACTCTGAGAAGTCTCATGTGAAGAGCATGGTACACCATCGGCATTAAATCTTCACTGCAGCCAAATTTGTGGACACATCATAGAACAAAATCCCTGTGGGGAACATTTATCAACAGGGCGGTGGAATATTCATTGAAGTacattaccttttttttgtccTTGTAATCCAACACCAGGTCTGCAGGGGACGGCTCCTTGAAGATTTAGACTTGTCAGAAGGTTTTTCAGAAGTCGGCCCCTTCGTCTTGTTTACTATCCCCACTATGAAGCTGTCCAGGGTTATATTGCAGACAAGTTTCTTTAATGACAACTCGCTGCTAAAGAGTCATGACTTTACAGAGGTTGAGAAAGGCTGTATTGTCCATTGGATTCTTTATCTCATTTGGCCGGGTCAAAATctctgcatacacacacacaaaggacggAACATTGTGAAAAAGCATGAAACTCTATTGGAATGCCACAGAAGAGACGACAGAGATGAGTTGACTGTCTTTACTCAATGACTGAAGGTCATGATGGTCAAATGTGGACATTTTGGACGACTTAGCTTAtaacttatgtttttttatgtggtGCCAACATACAGTAGACTAGAAGAGTAGATTTTGTCAATGAACCTCACGCATCTTGTACACATCACTGGGAGCATTAAGCATATGTGGACCCCTGGCTCATTTTAATGGTCTACACTTTGTaggtgcgtgcgtgcatgcatgtgtgtgcgtgcttgcatCTGTCcatgtgtgaatatgtgtatACATgcttgtgtgcctgtgtgtgagtgagcgtGCACATCCAGATATACACTGTGAAATAAGTCATATTCAATGCATTATTCATACTCTTGTATATTTTTGGGACACACCCAGACCAGAGCTTACCATCTGGCAAGAGAAGCATTTGTGGTTTTACAGATGTTGGATCTCATTTAAATCTTCACGGATGAATCCTGGCtttgccttttcttttctttcatgtcttttatttagtacatagatatatttatattgggggaaatattattaaaactgGGGACAGATCTGCAGTATGTCACATAAGTTAAATTCTGTAATTAAAATCAATTCATGCGTAATTAAATGTATTCAGAATCCTTGTCTAAATTGACTATATTTTGATATGAAATGTTTTGGTCAGCTGGACATGCTATTTGCTGATTTCAGATGCTTGATATATTTgaaattgtgtatatatattcaaTTAATGTATTTTATGTTCTGTGGGTCTCATTCCAAGAGGAAGTAAAGAAAAGGAGGAGCACAAGAGGCATTCTTCTGAAAGAAGTACAAGAGGTGGACACAATAACATGAATACCAGTTACTATAATACCAGATATTTCAAAAACACAGAATAGGATAAAACACTATCCAAATACCACAACCTAATAAGCTATGGTCTGCAAGATGAATGAACATCCTTAAGTCTAAAAAAATAACCTTCACAGAGGTAGTGTTTGTTGTAGGGCAATTACAATAGATTGCATAATATTGTACAGGTGTTCCTGTTAATATGTCTACACcctgtttttttcatttctttgtaCTAAAAAAATCTGTACATCTCCATCTTAATGTATGCATTTGAGTATATAAAGAGAGTGTCCGCTCCCCCGAGCTGCGGAGTGtgtatttggtgtgtgtgtgagtgttttccAGGTCAACAGTAGTCTGTGTCTGATTCCATGCTACctttatttatcacttttttgtttGCACTTACCGTAAATACATTGCCCCTTTGATTTGAGCCACTGCCAATGCAGGAACTTCTGCTTCAGGGCAGTGGCAGAGTACATAGATCTGTATTTTAGTAAAATCTTATAGGAACATAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72525 lncRNA downstream 105317 29900560 ~ 29902720 (-) True G54272
TU72424 lncRNA downstream 185220 29822520 ~ 29822817 (-) True G54189
TU72420 lncRNA downstream 192587 29814350 ~ 29815450 (-) True G54185
XR_005639328.1 lncRNA downstream 329233 29676371 ~ 29678804 (-) True LOC120559594
TU72338 lncRNA downstream 329233 29676468 ~ 29678804 (-) False LOC120559594
XR_005639359.1 lncRNA upstream 480723 30496040 ~ 30500331 (-) True LOC120559738
XR_005639342.1 lncRNA upstream 603949 30619266 ~ 30619890 (-) True LOC120559660
TU72708 lncRNA upstream 618615 30633932 ~ 30635350 (-) True G54407
TU72718 lncRNA upstream 640353 30655670 ~ 30706761 (-) False G54414
TU72715 lncRNA upstream 688969 30704286 ~ 30706761 (-) True G54414
XM_039801700.1 mRNA downstream 48266 29947906 ~ 29959771 (-) True mapk13
XM_039800361.1 mRNA downstream 61804 29928188 ~ 29946233 (-) False brpf3b
XM_039800360.1 mRNA downstream 61804 29928188 ~ 29946233 (-) True brpf3b
XM_039799649.1 mRNA downstream 157083 29846882 ~ 29850954 (-) True bcas2
XM_039801883.1 mRNA downstream 170510 29822872 ~ 29837527 (-) True tmem240a
XM_039799787.1 mRNA upstream 87914 30103231 ~ 30199840 (-) True mtor
XM_039801722.1 mRNA upstream 526184 30541501 ~ 30547082 (-) True LOC120559739
XM_039801727.1 mRNA upstream 548243 30563560 ~ 30585652 (-) False dennd2c
XM_039801724.1 mRNA upstream 548243 30563560 ~ 30585652 (-) False dennd2c
XM_039801725.1 mRNA upstream 548243 30563560 ~ 30585652 (-) False dennd2c
TU72353 other downstream 242164 29761074 ~ 29765873 (-) False cdk11b
TU72358 other downstream 242844 29761074 ~ 29765193 (-) False cdk11b
XR_005639094.1 other downstream 515064 29476009 ~ 29492973 (-) False clcnk
XR_005639350.1 other downstream 2347391 27644783 ~ 27660646 (-) False xpc
XR_005639389.1 other downstream 2809210 27198712 ~ 27198827 (-) True LOC120559934
unassigned_transcript_235 other upstream 1211743 31227060 ~ 31227131 (-) True trnaq-uug_1
TU73035 other upstream 2291605 32306922 ~ 32312778 (-) False LOC120558955
TU73036 other upstream 2301643 32316960 ~ 32321952 (-) False LOC120558955
TU73146 other upstream 2752040 32767357 ~ 32773486 (-) True G54756
TU73247 other upstream 2864876 32880193 ~ 32887290 (-) True G54834

Expression Profile