RNA id: XR_005639346.1


Basic Information

Item Value
RNA id XR_005639346.1
length 3467
RNA type transcript
GC content 0.45
exon number 6
gene id tafa5l
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 29971196 ~ 30072699 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gagccagagagaaagcgagggagagagagcagatgGAAACAGTGTAACTCAAGGCAACTCAGGGTGCAGCAGCAACAGAAGCAGCGTTTCCTTCTATGGATTGAAGGGAGGAAATCCTCTTCTTCGTCGTCGCCTGCATGCAAATGCAGAACGGGACAGAATAAGGCTTAACACACTCGTCTGAAAAACAGCACTTGGCTTTGCGGCAATGGGAGCTTTTCGAGCCCGAGATGCAAGGCATCATCCCTGACAATTTCCCAGAGCATCCACAAAGGCTCATACAGGTGACAAGTGTGTCCAACTTCACTGCACCGCCTGCATTGACGCGCTTCAGAGTGCGTTTCGTCCAGCGGCAGTGCGCTGCGTGAGACCCGCCGCTCTTGTTTTGACGTGACATTTCGCTTGAGCTGCAGCGCATATGTGGCCACATATGACGCATTTGCGCCTTCAGCTGTTTTGGACGCATGGAGTGTTGCGTTTCCGGACAAGTTTTTGTGCTGATTGGTATGTTCGTCATGTCCGCCTGGGTTAACTTGCGCGTTTCTCTGTAGAGTCACACAGAGCCGCTCTCGGTGCAGAAGTTGGTTGGGAATAATAATAGAGACAGTGCGGAGCGCAGAGGAGGAAAATAGAGGTGACAGCGGCGTTCAGGGGATGTTGAGCGGCTGAATTTACTTGCAGCATTATCAGCATATATCCGTGTGAGGATCAAAACTGCGAGGGACTGCTGCTGCTCACTCCTCTTCATCTTCATATACTAACAGTTTTTTGCAGAAGCCTGCCAGTGAATCCCAGCTCCTGAAACCACAGCTGCGTAAACTTGGCCAGATCTGGTGACATTGtaccctgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgcgtgtgcgtgtgtgtgtgtgtgtgtgtgctgagcaGCCTGGATGGATATGCGGCTCACCGAGGGAATTTGAAAAGCAAGAGGGAATTACTATCAGCTCCTCTCTTCTATTATAACCTCAAAATGGATGCCGACGACAGGCTGTGGAGACGCCACTGGATTTGCCACTCTTCCGCTGATCTGCTTGACATCTGAGAGGCGCAAGCGTTCAAAGTTTGGATAATCTAAAAGGCTGAAGGTGTAGGATGCAGTCTGGAGTGAAGACGCTCTCCGCAGGTGGAGGTGCGTCACTCTGCTGCCTGCTGCTCCTCTGGCTCATCTACTCCCATCTGCTCAGAGAGGGCCAGTTGGCGGTAGGAACCTGCGAGATAGTGATGCTCAACAGAGACAGCAGCGTTCCCAGACGGACCATCGCTAGGCAGACGGCCCGCTGCGCCTGCCGGAGAGGCCAGATTGCTGGGACCACCAGGGCGAGGCCAGCATGTGTAGACGCGCGAATCGTGCGGAGTCGTCAGTGGTGTGAGATGGCTCCCTGCCTGGAGGGGGAGGTCTGCAGCCTCCTGTTCAACCGATCTGGCTGGACCTGCACCAAGGGCAGTGGTCGCATCAAGACCGTCACGCCCTGGGCAGCTGCGGCAGATTTCATGCACGCATTCCCATCGTGCTCTAATCTACCCTGACAGCACACTTAGCCTTTGCCCAAGGAGCCATCATAGGTTGCATAGAAAACAGCAAGTATATTCATTGACATCCATGCTACAAAAGGAACTGAGGCCAGTCACTACACCACAATATTGTATCCATATACCAACGAGACTCCCAAACTTTACACCAGGTTTGAccttcagtaaaaaaaaaaattaaaataatccaaagCTTTTCTAATCACCACAGTGAAAGACTCTCGACAGACACTTCTGAGAACTCTGAGAAGTCTCATGTGAAGAGCATGGTACACCATCGGCATTAAATCTTCACTGCAGCCAAATTTGTGGACACATCATAGAACAAAATCCCTGTGGGGAACATTTATCAACAGGGCGGTGGAATATTCATTGAAGTacattaccttttttttgtccTTGTAATCCAACACCAGGTCTGCAGGGGACGGCTCCTTGAAGATTTAGACTTGTCAGAAGGTTTTTCAGAAGTCGGCCCCTTCGTCTTGTTTACTATCCCCACTATGAAGCTGTCCAGGGTTATATTGCAGACAAGTTTCTTTAATGACAACTCGCTGCTAAAGAGTCATGACTTTACAGAGGTTGAGAAAGGCTGTATTGTCCATTGGATTCTTTATCTCATTTGGCCGGGTCAAAATctctgcatacacacacacaaaggacggAACATTGTGAAAAAGCATGAAACTCTATTGGAATGCCACAGAAGAGACGACAGAGATGAGTTGACTGTCTTTACTCAATGACTGAAGGTCATGATGGTCAAATGTGGACATTTTGGACGACTTAGCTTAtaacttatgtttttttatgtggtGCCAACATACAGTAGACTAGAAGAGTAGATTTTGTCAATGAACCTCACGCATCTTGTACACATCACTGGGAGCATTAAGCATATGTGGACCCCTGGCTCATTTTAATGGTCTACACTTTGTaggtgcgtgcgtgcatgcatgtgtgtgcgtgcttgcatCTGTCcatgtgtgaatatgtgtatACATgcttgtgtgcctgtgtgtgagtgagcgtGCACATCCAGATATACACTGTGAAATAAGTCATATTCAATGCATTATTCATACTCTTGTATATTTTTGGGACACACCCAGACCAGAGCTTACCATCTGGCAAGAGAAGCATTTGTGGTTTTACAGATGTTGGATCTCATTTAAATCTTCACGGATGAATCCTGGCtttgccttttcttttctttcatgtcttttatttagtacatagatatatttatattgggggaaatattattaaaactgGGGACAGATCTGCAGTATGTCACATAAGTTAAATTCTGTAATTAAAATCAATTCATGCGTAATTAAATGTATTCAGAATCCTTGTCTAAATTGACTATATTTTGATATGAAATGTTTTGGTCAGCTGGACATGCTATTTGCTGATTTCAGATGCTTGATATATTTgaaattgtgtatatatattcaaTTAATGTATTTTATGTTCTGTGGGTCTCATTCCAAGAGGAAGTAAAGAAAAGGAGGAGCACAAGAGGCATTCTTCTGAAAGAAGTACAAGAGGTGGACACAATAACATGAATACCAGTTACTATAATACCAGATATTTCAAAAACACAGAATAGGATAAAACACTATCCAAATACCACAACCTAATAAGCTATGGTCTGCAAGATGAATGAACATCCTTAAGTCTAAAAAAATAACCTTCACAGAGGTAGTGTTTGTTGTAGGGCAATTACAATAGATTGCATAATATTGTACAGGTGTTCCTGTTAATATGTCTACACcctgtttttttcatttctttgtaCTAAAAAAATCTGTACATCTCCATCTTAATGTATGCATTTGAGTATATAAAGAGAGTGTCCGCTCCCCCGAGCTGCGGAGTGtgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72525 lncRNA downstream 105522 29900560 ~ 29902720 (-) True G54272
TU72424 lncRNA downstream 185425 29822520 ~ 29822817 (-) True G54189
TU72420 lncRNA downstream 192792 29814350 ~ 29815450 (-) True G54185
XR_005639328.1 lncRNA downstream 329438 29676371 ~ 29678804 (-) True LOC120559594
XR_005639359.1 lncRNA upstream 430100 30496040 ~ 30500331 (-) True LOC120559738
XR_005639342.1 lncRNA upstream 553326 30619266 ~ 30619890 (-) True LOC120559660
TU72708 lncRNA upstream 567992 30633932 ~ 30635350 (-) True G54407
TU72718 lncRNA upstream 589730 30655670 ~ 30706761 (-) False G54414
TU72715 lncRNA upstream 638346 30704286 ~ 30706761 (-) True G54414
XM_039801700.1 mRNA downstream 48471 29947906 ~ 29959771 (-) True mapk13
XM_039800361.1 mRNA downstream 62009 29928188 ~ 29946233 (-) False brpf3b
XM_039800360.1 mRNA downstream 62009 29928188 ~ 29946233 (-) True brpf3b
XM_039799649.1 mRNA downstream 157288 29846882 ~ 29850954 (-) True bcas2
XM_039801883.1 mRNA downstream 170715 29822872 ~ 29837527 (-) True tmem240a
XM_039799787.1 mRNA upstream 37291 30103231 ~ 30199840 (-) True mtor
XM_039801722.1 mRNA upstream 475561 30541501 ~ 30547082 (-) True LOC120559739
XM_039801727.1 mRNA upstream 497620 30563560 ~ 30585652 (-) False dennd2c
XM_039801724.1 mRNA upstream 497620 30563560 ~ 30585652 (-) False dennd2c
XM_039801725.1 mRNA upstream 497620 30563560 ~ 30585652 (-) False dennd2c
TU72353 other downstream 242369 29761074 ~ 29765873 (-) False cdk11b
TU72358 other downstream 243049 29761074 ~ 29765193 (-) False cdk11b
XR_005639094.1 other downstream 515269 29476009 ~ 29492973 (-) False clcnk
XR_005639350.1 other downstream 2347596 27644783 ~ 27660646 (-) False xpc
XR_005639389.1 other downstream 2809415 27198712 ~ 27198827 (-) True LOC120559934
unassigned_transcript_235 other upstream 1161120 31227060 ~ 31227131 (-) True trnaq-uug_1
TU73035 other upstream 2240982 32306922 ~ 32312778 (-) False LOC120558955
TU73036 other upstream 2251020 32316960 ~ 32321952 (-) False LOC120558955
TU73146 other upstream 2701417 32767357 ~ 32773486 (-) True G54756
TU73247 other upstream 2814253 32880193 ~ 32887290 (-) True G54834

Expression Profile