RNA id: TU72718


Basic Information

Item Value
RNA id TU72718
length 1908
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G54414
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 30655670 ~ 30706761 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTAATTGATGCATGTTACATTCAATACCCATGATGCTCCCACACATAATTGCATTCATAACTTTTTCTCACCATCTCAGATGTGGAATGCAACAGACAACTTGTAAATGCCTTACACTatcatatatttacatattatcCTCTGCTTCTGTACATGGCAAATCTTTAAATATGATCAAACATCAGAGGAGTAACATAGGATACAATGTATGACTGATTGTATGTAGTTTCTCTGAAGcatatttaatgtactttttTCCTTCCAAATAAAGGCATGTGCATAAAGCACCGTCATAAAAAGTGAGTCACACAGTTAGACATGATAGGTTAAAAACTCCATGACGCCTCTTCTTCATTCATATTTCACAAGATAAAACTTCCTTCAGCAgggttttctttcaaaatgCACAAAAGTACAAAAGGACATGTAAGGTAACCAAAGGGAAtagaaaataaacataaaatgtgCTCAGTGCATTAAGACTTTCCAATACAACAAAGAAACTAGAGGTGTTTGCCCTGTTCAATCTCTGTGATAAATAAATTCACATTGTTACAGGCAGACAGTGAGAGGGCTTGAATCTAAAAACCAAAGTACAGTGTGAGTAAACAGAAGTGAGAAAATAaagtgaagcaaaaaaaaaaaaaattactaaaaCGTGTGAAGGCAAAGCTGCACATTTGTCATCCAAACCGAATATATCTCACAAGTTAAAGATTTTCTTTCtgggtttaaaataaaaaaatattatagcTCAGACCAGCCAAAATGCAAGCTGTATATAATGCTGTTAGCTACATTGAGTGTTTTGGCCTTTGAATACATCACCATAGATTTGTTTGGAGGAGCAAGACATTTCAACTGTGCTATAGTTCGGTTTGGTATTGGCAGATACTTCAAacctaaaaatgtctttgtgATCATTTCATATTAGCCCTGCAAACATCAAATGCAAACTCTGGGAGCTCTCCAACTACCCTCATCAGTAAACTTAAACCAAGCATTAGGAGTAAACTAGTTCTAGGGTTATGTCTTGACCGGGAATATTTATCATTCTTTAAATTTTTAGGAGTCACTATTGACTCCTTGTAGTGTAAATGATTTGACTGGCTGAACAAGCATACATGTGGCCACGTACGTGTACacacgtgcgcgcacacacacacacacacacacacatgcgcgtaCGTACGCAAACAGTGCAGTGGCTGTGTTGAGATAGGATGACTTTCAGACTGGCACAGAGACAGTGCATGTGTCAAAAATGACATCCACATACAGTAATACAACACAGGAGTCCCAAAAAAATCAcctggaaaataaaaaatatataaacagcAATATCTGTGTGCTCAGTCAGCTGCTGTGATGGCCGAATGTGTGTTCGCACGAGGAAGACTTTAGTAGGTGTCTGCACTGAGATGACAATTAGTTGTAAAATTAGATCATGGGTTAATGTCGTCAATCATTTCTTTGTTCTGTTGAAGCCACTTGCCTTGAAGCAGCGgtgatgtaatttttttttttttttttaacgcttACATGTTTATCTCCTTGGCAAAAATCCAGCTCTGAATCATTAAATTCAATTATATCACAGGATTTAAAGGACAAACTTTTTACAATTTGAGAAAGGCCAACAGTGTAACTATTGTATTGCAGTTAATGACAAGCAGAAACTCTTTTGCCACAAAGCATGAACCTAAATGAGGAGACACAGTCACTGTTGAACTATAGCCATTCAAACCTTCAATGAGTGGCTGCCACATAGAAATGCAGCATTTTCCACCTTGGCATGGTTTTTGACACTTTGCTCTCAGAGTCAAAGGCAGACAGTGTTGATATATGTATTcatataaataacaaaacagTACGGTATAAATATAaagattctGTGACTGTGTAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72708 lncRNA downstream 20320 30633932 ~ 30635350 (-) True G54407
XR_005639342.1 lncRNA downstream 35780 30619266 ~ 30619890 (-) True LOC120559660
XR_005639359.1 lncRNA downstream 155339 30496040 ~ 30500331 (-) True LOC120559738
TU72537 lncRNA downstream 640353 30008037 ~ 30015317 (-) False tafa5l
TU72525 lncRNA downstream 752950 29900560 ~ 29902720 (-) True G54272
TU72754 lncRNA upstream 78332 30785093 ~ 30785797 (-) True G54444
TU72791 lncRNA upstream 182257 30889018 ~ 30889218 (-) True G54470
TU72834 lncRNA upstream 357980 31064741 ~ 31064972 (-) True G54508
TU72835 lncRNA upstream 391219 31097980 ~ 31098185 (-) True G54509
TU72888 lncRNA upstream 528486 31235247 ~ 31235474 (-) True G54549
XM_039801563.1 mRNA downstream 25122 30612093 ~ 30630548 (-) False csde1
XM_039800562.1 mRNA upstream 190216 30896977 ~ 30902027 (-) False zgpat
XM_039800561.1 mRNA upstream 190518 30897279 ~ 30902908 (-) True zgpat
XM_039800564.1 mRNA upstream 221482 30928243 ~ 30981176 (-) True LOC120559110
XM_039801205.1 mRNA upstream 281313 30988074 ~ 31057576 (-) True ctnnbl1
XM_039799270.1 mRNA upstream 406999 31113760 ~ 31125091 (-) True LOC120558334
TU72538 other downstream 582971 29971196 ~ 30072699 (-) False tafa5l
XR_005639345.1 other downstream 589729 30008242 ~ 30065941 (-) False tafa5l
XR_005639344.1 other downstream 589729 30008242 ~ 30065941 (-) True tafa5l
XR_005639347.1 other downstream 589730 30008242 ~ 30065940 (-) False tafa5l
XR_005639346.1 other downstream 589730 30008242 ~ 30065940 (-) False tafa5l
unassigned_transcript_235 other upstream 520299 31227060 ~ 31227131 (-) True trnaq-uug_1
TU73035 other upstream 1600161 32306922 ~ 32312778 (-) False LOC120558955
TU73036 other upstream 1610199 32316960 ~ 32321952 (-) False LOC120558955
TU73146 other upstream 2060596 32767357 ~ 32773486 (-) True G54756
TU73247 other upstream 2173432 32880193 ~ 32887290 (-) True G54834

Expression Profile