RNA id: TU72910


Basic Information

Item Value
RNA id TU72910
length 3297
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G54567
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 31347281 ~ 31350577 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTATGTACAGCTGTTTTATTTGTGATTTCCCCAAAACATTATCGGTATTTTACTACATACAATGCATGTAATCAAAGTACAATGGATCAACTTTAAAGACGAGAAGagcaaaaagaaaagagcaACACAAAAACCAGGTGGTGACTTTGACCATGAAGAGAGACATTGGTTaaggtactgtatgtataacactatttcttttataaataGGGCGATTGATGGTGCCATCAACAACGAAGCCATGGCAACGGTATATGCACTGAGGTTGGGTGAGTATTACTGCATggtggtgtgcgtgtgtgaaggTAAAGGTACTTATCTTGGGACTTTGCTGAGATCAATTACAATTataagctttatttttttttttgcttttgtcctAATTATGAGAATAGTTAATGCTATGGGAGGTCACTGTCTGCTGgacattctttaaaaaaaaaaaaaaaagcttaattaaaataaaaatcaagaaGTTACATTAGACTGTTGCGTCAGCACATCAAGTAAAGATTTTGAACTGACatctaaataatttttttatataatctaTGGTTAGGCTTTACAAGAACTGTCACTGACAAATCAGCCAAGGGGAATAAATTAAAGTACTGAATGAAACTAAAGAACAACCAGCAGAATAACAATGACTCAGCACATAAGGACATGCATCTCCCACAAGCAAGCTACTGTTGACTCATAAAACCGATACAACTGAAGAAACTAACAAATGTGTGGATATGAAGACAGGAAAGATTAACCACCGAATGAATGAAGCTGGCAGCAATACAAGGACAGATCGTCCCTGTATTCTGGTTTAAAACACCTGATATTGTCCCAAAATAAGGCTGTGGGTTCTAGGCACACCAAGGTACAACTGAGCTGAGCAAtatgtgcatttatgttttatttttttgttttttttaaaagacatgtaaCTTTCTGTATGTTCTGGATTGATTAATGTTCACTTTATTTCAAACCACCTGGCTAGCCCAGGACCTGCTATAGAAATtagagtttgttttattttaaaagaagaaaaaacacaagacgATGAGAACAAATCAGTTTTAGACGTCACACATTTTGCAGAGCATTtagagacaaaaacacaagtGCATCATTGGCAAAAACTGCTGGTGAAGGATAAAGGAGTGCACAGaaatgtgcagtgtgtgtgtgtctctgagtgtgtgtgtgtctgagtgtgtgtactgtattcAGTGTCTTTTTCAGTCAGTATGAGTGTATGTTTGCCTGTGAGTGCAGTTGTTTAAGTGCATTTGTGTATGAGCAAGCACATATTTAAAGAGGTAGCAGAGAAATGCGATCAGAGCAACAGATGACAATCGGTCTTGAATGACAACCATCCATCTGTTACGACAGTAGAAAAGACGACTTTCTATCTACCTGCTCTTCTCAGGTTCACACATGGGCGACAATATTTCAGTCCGAGCCACAGACCTTTACTGTGGCCGCTCCAAACTGAGATTTACTCAGACATcggttgaaaaaaaagcagctaaagttcaatattcaGTCGGTTGATTTGCATTATATTTAACCATTTACTCAACAAATAAGCTTCCTAATATCCATTTTCCATAAAGGACATGAAACAGATAACATGTTGATGCAATCAAATAATTGCATCCCTAAATATCTCATACTTTTTAAGAACTGAATCAACTCAATCAGACTGAATTTCCATATCGGCCCAAAGCTTTTAAACTTCCACATGAAACGTGATTCATTAGTCGATATAGTACTAAGCGTGATCCCTAAAGGCGTGGTGTGTCGTTCACAGCATATATTCTGAAGGCCTGGTTTCCTGAAAGCTGAGTGAATAAAAAACAGCAAATAAACAAAGGATTCAGGAGCAGAGTTAGAGGGAGTTAGAAGAAGGCAGGCAGAGTGCGGAGGTTGGGTTGTAGCGGGGGTCGTGAGACTTGGCTGGTTGctgagttaaaaaaataatatacacacTATTTGTATCTAGAATATCTTATATGGGATCCCAATGTTGCAAACCCTTATATCATATAGAAAGCTAGAGACAAACAAACCGGAAACTGCAATACCAAAGCGAAGCAGACTGAGGGACAACACTGTGTTGGGTGTTAAATCCAGGCCGCAGCtgttactttttacattttagatgTTAGGACAGAGCGGTTGTCAAAGTCTAACTACCGCTCCCCTTATCCGAGTCACTCTAGTATGAAGCTGAAAGCGTCTGCACAAGCCTGATTGAGAGGTTTTTCAACTGTTAATCCAGCACTTTTAACTctctatatataaaaaacaaaaaacaaaaaaagagtagGCCTACAACTGGCAGCTCTGTGGAGTCCCATCAGACAGACGAGTCTTCTGGCCGACTCTGGTGGCATTTTGCTACAACAACGGTTAGGAAGGCGTTGCTAGACTCAAGGAGGAGCGGCTTCAAGTCCAAATTCTCCCTGTCCACTGATGAGCAGACGCACATCCACTCATCATCGCCTCTGTGGTTACATGCTACACTCACATAGCAGGCTTTCAGGCCCAATTCCCATTTGCTGATCATATCGTTAATTTGTTGATCGTGGATTCTCTAAATTAGTCTGTTTTGGTTAAACTGCGTTTATTTtccattaataataaaaatactattttcttttccaagTGTGTTATGATTCACATTTTGCTTCGTCTTTTTGTTTTCACAGACTGGTACTAATGtccactactactacttcagttattttgttgttttaataGCTTTGCTATTTAAAGGgattgtttgacattttgggatatATTCGATTCACTTTCTTGCGGAGTGTTAGCTGAGGAAAGCGATAATGCTCTCATATCCGTTTGCTAAATATAAAGCTAACAGCCAGGAGGCGCtgagcttagcttagcataaagactagaatcaggggaaaacagctagccgGGCTCTGtctgaaagaaaataaatctgctttccagtgcctcaaaaagCTCACTTAGTAACACGTTATATCTTGTATATTAAAAATTATGCTCAAAATAATTAGAAAATCTGTGTCAcatgtaaaagaaagaaaaaagaacgtGTGCACTTTCAGCCGCTATGTGAAAGTAGGCTTAACATGCATTTACACACTTCGGTGGCACCGTGATGCTAGAGAGGCCTCTGATCTACTGACTAAGATTTGTTGGCTTATATTGAgatttgaggtaaaaaaaattcATCCAGCATTTGAAAATAGATTAAAAAGAatttactgtacatatacacaaaaattctaaattagtgttaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72888 lncRNA downstream 111807 31235247 ~ 31235474 (-) True G54549
TU72835 lncRNA downstream 249096 31097980 ~ 31098185 (-) True G54509
TU72834 lncRNA downstream 282309 31064741 ~ 31064972 (-) True G54508
TU72791 lncRNA downstream 458063 30889018 ~ 30889218 (-) True G54470
TU72754 lncRNA downstream 561484 30785093 ~ 30785797 (-) True G54444
TU72945 lncRNA upstream 140979 31491556 ~ 31527860 (-) True G54599
TU72947 lncRNA upstream 148200 31498777 ~ 31500889 (-) True G54600
TU72956 lncRNA upstream 272544 31623121 ~ 31623330 (-) True G54609
TU72966 lncRNA upstream 591110 31941687 ~ 31944265 (-) True G54618
TU72978 lncRNA upstream 641772 31992349 ~ 31992551 (-) True G54629
XM_039800310.1 mRNA downstream 155925 31162519 ~ 31191356 (-) False itchb
XM_039800311.1 mRNA downstream 156423 31162519 ~ 31190858 (-) True itchb
XM_039801623.1 mRNA downstream 205407 31128228 ~ 31141874 (-) True e2f1
XM_039799270.1 mRNA downstream 222190 31113760 ~ 31125091 (-) True LOC120558334
XM_039801205.1 mRNA downstream 289705 30988074 ~ 31057576 (-) True ctnnbl1
XM_039801985.1 mRNA upstream 115191 31465768 ~ 31469785 (-) False LOC120559902
XM_039801984.1 mRNA upstream 115191 31465768 ~ 31469785 (-) True LOC120559902
XM_039800341.1 mRNA upstream 942365 32292942 ~ 32323275 (-) False LOC120558955
XM_039800343.1 mRNA upstream 942365 32292942 ~ 32321859 (-) False LOC120558955
XM_039800342.1 mRNA upstream 942365 32292942 ~ 32321823 (-) False LOC120558955
unassigned_transcript_235 other downstream 120150 31227060 ~ 31227131 (-) True trnaq-uug_1
XR_005639345.1 other downstream 1281340 30008242 ~ 30065941 (-) False tafa5l
TU73035 other upstream 956345 32306922 ~ 32312778 (-) False LOC120558955
TU73036 other upstream 966383 32316960 ~ 32321952 (-) False LOC120558955
TU73146 other upstream 1416780 32767357 ~ 32773486 (-) True G54756
TU73247 other upstream 1529616 32880193 ~ 32887290 (-) True G54834
TU73607 other upstream 2673441 34024018 ~ 34127495 (-) False G55124

Expression Profile