RNA id: TCONS_00074071


Basic Information

Item Value
RNA id TCONS_00074071
length 2114
RNA type nonsense_mediated_decay
GC content 0.39
exon number 3
gene id XLOC_037723
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 17415241 ~ 17417666 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCCTTCTCAATTTTTATTCAGTAAAATGGCTGAAGCTCGAATTTTTCAGGATGAGTTCAATTGTCCGGTGTGTTTGGATTTACTTAACGATCCAGTGACCATTCCGTGTGGACACAGTTACTGTAAGAGCTGTATTACTGGCTGCTGGAATCAAGAGGATCAGAGGGGAGTCTACAGCTGCCCTCAGTGCAGACAGGCCTACAGTCCAAGACCTACTTTAGGTAAAAACACCATTCTGGGTGAAATGGTGGAGAAACTGAAGAAGATTAAACTTCCTGCTGACTGTTATGCTGGCCCTGGAGAAGTGCAGTGTGACGTCTGTACTGGAAGAAAATACAAAGCAGTGAAGTCCTGTATGGCTTGTCTAAACTCTTACTGTCAAAGTCATCTTGAACAACATGAGGATTTATTTAgaggaaaaaaacacaatttgaTGGATGCCACCACACAGCTACAGGGGATAGTCTGCCATAAACATGAGAAGATCAAGGAGGTATTTTGCCGCACAGATAATAAGTGTATTTGTGTGCTGTGCACAATGGATGAACATAAAAACCACAACACTGTATCAGCGGCAGCTCAGCGGGCAGAAGAACAGGTATAAACACATGGCACTGGTGAAATAAtgcacttttttattaaaaatgaaaaatactgcATGTTCATCTTTTTTTCAGGAACACTGttgtttaaattcaattaatctttatttctatagcacttttacaatgtagattgtgtcaaagcagctttacaaagacGATTATAGTTAACTCAAAtagtgtcagtctagttttcagtgttgaagttcagtttagttcagttcagtgtggtgtaatattcactgctgagagttcaaacactgaagagcaaatcctcagggcacgaccatttctcctaagGCCAAACGTcctgtgtagagctgcagtctaggcgcaggctggagaaagctggacatccatcatggagaagctgcagacGAGAGAGGTCATCTGTTGGTGTACAGGCTGTTCTTCAGGATCAATGCGAGGACTTGTCACTGGGGTCCTACAAGGATCAGTcttatgctctccactcctccatgaccaccacagcagctgctcaggatacagcctggtccaggattatggaaaccttggaaataataaaaaaagaccaaCATTAGGGcagatgccgttcaaattataaagtcttttgggaagtgttcccagctccagttgccctaaataatgcagactaacaatcttttaagaggatttggatttcacaagcatttgtgttttatgtgtatgctaatgcaaagagatctccctcaGATACTGGGATGCTGTTACTAATACTAACCACTGTTAGTGTGTTAATGATATAAGTAAATTAATAGAGCTTGTAAAATAATCACTAATTTGTTCGTTATTAAATTCCTGAATAAATTAGTATAATGATTCTTATTGAATGAcacttgaaaaataaataaatatatttaaaagtttgTAAGGAAAAACAAAAACGTTGAGCAAAAAAGCTTAAGTACATCATGCTTTTATGATGCATTGTCTTGTCAAGTATTTCTTATGTTTGCTGTTCATTTTTATTCCAAAGAAACACTTaaaaggcttgaaaagaaagttcCAGCAAAGAATCAAGCAGGGAGAAAAAGATCTTCAGAAGCTGAGGGATGCTGTGAAGTCTTATAAGTGCTCTGCCCAGGCAGCAGTAAACTACACTGAGAAGATCTTTAATGAGCTGATAAGTTCCATTATGAGAAGGCGATCTGAGGTCACACTGCTAATCAGAGGTCAGGAAAAGGCTGCAGTGGATCATGCTGAAACACTTATTTTTCAAGTGAAGCAGGATACGGAGACTCTGAGGGAAAGTGACGCTGAGCTGGAGAATCTTTCGCATGTACAAAATCACATTCATTTTCTCCAGGTAACATCTAATAACAGAACTTCTAATGACAAGATTTTCAGCTTTTAAAATGAGCAGCTTAAAGATTATGTTGTCCTAAGCTTTGATAAGTGATGCAAattgttgtttttacaaataattagtcagattctcatttaacctCAGCCATAAAAAGAGCAAATCAATAAAACTATTTTCAGAAAAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-515 Predicted to enable zinc ion binding activity.

Ensembl:

ensembl_id ENSDART00000130995

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074972 lncRNA downstream 637393 16776187 ~ 16777848 (-) True XLOC_037718
TCONS_00074062 lncRNA downstream 1261691 16151225 ~ 16153550 (-) False XLOC_037717
TCONS_00074060 lncRNA downstream 1281781 16129319 ~ 16133460 (-) False XLOC_037717
TCONS_00074057 lncRNA downstream 1306244 16107106 ~ 16108997 (-) True XLOC_037716
TCONS_00074971 lncRNA downstream 1515355 15899478 ~ 15899886 (-) True XLOC_037714
TCONS_00075326 lncRNA upstream 501492 17919120 ~ 17922198 (-) False XLOC_037725
TCONS_00075327 lncRNA upstream 501492 17919120 ~ 17938305 (-) True XLOC_037725
TCONS_00075328 lncRNA upstream 1154745 18572373 ~ 18577193 (-) True XLOC_037728
TCONS_00075329 lncRNA upstream 1303048 18720676 ~ 18724456 (-) True XLOC_037729
TCONS_00075330 lncRNA upstream 1490575 18908203 ~ 18911600 (-) False XLOC_037732
TCONS_00074070 mRNA downstream 128911 17045875 ~ 17286330 (-) True XLOC_037722
TCONS_00074068 mRNA downstream 537674 16867458 ~ 16877567 (-) False XLOC_037721
TCONS_00074067 mRNA downstream 537785 16867458 ~ 16877456 (-) False XLOC_037721
TCONS_00074069 mRNA downstream 538767 16867890 ~ 16876474 (-) True XLOC_037721
TCONS_00074066 mRNA downstream 561779 16835900 ~ 16853462 (-) True XLOC_037720
TCONS_00074074 mRNA upstream 122991 17540619 ~ 17783574 (-) True XLOC_037724
TCONS_00074075 mRNA upstream 744487 18162115 ~ 18215644 (-) True XLOC_037726
TCONS_00074076 mRNA upstream 892600 18310228 ~ 18424844 (-) False XLOC_037727
TCONS_00074077 mRNA upstream 902342 18319970 ~ 18568927 (-) False XLOC_037727
TCONS_00074079 mRNA upstream 1314877 18732505 ~ 18735256 (-) False XLOC_037730
TCONS_00074065 other downstream 591066 16823285 ~ 16824175 (-) True XLOC_037719
TCONS_00074054 other downstream 1515688 15898473 ~ 15899553 (-) False XLOC_037714
TCONS_00074051 other downstream 1625877 15782048 ~ 15789364 (-) False XLOC_037713
TCONS_00074050 other downstream 1726182 15685746 ~ 15689059 (-) True XLOC_037711
TCONS_00074049 other downstream 1843078 15570343 ~ 15572163 (-) True XLOC_037710
TCONS_00074078 other upstream 904955 18322583 ~ 18374185 (-) True XLOC_037727
TCONS_00074090 other upstream 1611725 19029353 ~ 19029467 (-) True XLOC_037735
TCONS_00074096 other upstream 1930496 19348124 ~ 19348239 (-) True XLOC_037740
TCONS_00074104 other upstream 2297954 19715582 ~ 19716857 (-) True XLOC_037748
TCONS_00074105 other upstream 2332723 19750351 ~ 19756068 (-) False XLOC_037749

Expression Profile

//