RNA id: XM_039800343.1


Basic Information

Item Value
RNA id XM_039800343.1
length 2540
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC120558955
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 32292942 ~ 32323275 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTAGACATGGCATCCAGCAGTCCAGGCATATTAAGCCAACACCGCCCAAGTTGTCACAGCCACCAGCGCCATCATGCCCGGTGAGGATAAACCACCACAACAGACCCGCCAgaggaaaaagaacaaaaagtcCCGCTCCAAGGGGAAGAGCCCGGGTGGGAGTCCCAGTGCCTGCCTGGGAGGCGCCATAGACGGCCAAGATGACCTCATCTTACCCCCAGTGCTCCAGCCTCCTCCTAAAAAGCTGGCGGCGGAGAAGCCGAAAGTATCCGTTGCCAAAGTGGAAGAGGAGTCGTCCATTGCTATCTGTCTTCAGGTGCTTTTCCCCTACCTGCTGGCTGGGATGGGCATGGTGATGGCCGGCATGGTGCTGGACGGTGTACAGcaTTGGACGGTGTTTAAGGTGATAACAGAAGTGTTCATCCTGGTGCCTGCGCTGGTGGGACTCAAAGGAAACCTGGAGATGACCCTGGCTGCTCGACTCTCCACTGCTGCCAACACAGGCCAAATGGACGACCCTGATAAACAATGGACCATGGTGTGCAGCAATCTGGCACTGATACAGGTTCAGGCGACAGTGGTGGGCTTCCTCGCGGCAGTGGCAGCTGTGTGTTTAGGGTCATTTTCTAGAGGGGGGATTGAACTGGACCAGGCAGCTGTTCTCTGTGCTAGCAGCATCACTACAGCCTTTGTAGCTGCTCTTTCCTTAGGCCTGGTGATGATCGGAGTGATCATCGGCTCCAGGAAGGTGGGGATCAACCCCGACAACGTGGCCACCCCCATCGCTGCCAGTCTGGGTGATTTGATCACCCTGTCCCTGCTGGCCGGGGTCAGCAGCACACTCTATGAATATAAAGATATATGGTACCTGTCGCCCGTGGTGATTCTGGTCTTCCTGGCTCTGATCCCGCTGTGGGTGGTGGTGGCCCGACAGAGCCCTCAGATCAGCGAGGTCCTCCGCTCAGGCTGGCAGCCTGTTATAGTAGCCATGTCCATTAGCAGTTTCGGAGGCCTTATACTGGACAAGACAGTGAGTGATCCCAACTTTAAGGGCATGGCTGTCTTCACGCCCGTCATTAACGGTGTGGGTGGTAACTTGGTGGCCATCCAGGCCAGTCGGATCTCTACCTACCTGCACTTCTGGAGCATCCCAGGGGTGCTGCCCTACAAGATGAGGCAGCACTGGCCCAATCCTTGCATCACCTTCTTCTCCTCAGGAGTGAACTCCAAGTCAGCGCGGGTGCTTCTGATGCTGGTTGTCCCCGGTCACCTGGTCTTCCTCTACGCCATCTCTCTGCTGCAGGGAGAAGAGGTGCCTATCAGTGTAGCCTTCACAATCTGCTACCTgtgtgctgctctgctgcagGTGGCCATCCTCCTTTACTTTGCCGACCTCATCATCCGTGTGATGTGGAGACGGAGCCTGGACCCAGACAACTTCTCCATCCCCTACCTGACCGCCCTGGGGGACCTGCTGGGCACCGGCTTTCTGGCCCTCTGCTTCCGCTGCGTCTCACTGTTTCAGAGCCTCGGCCTCTGAATGTTTTACCCCTGAACTCTTAGCCAGCCGCGGTCTCGCtgcaccatttttttttttttttacatttacgcAGAGATGCTTTTAAATTGGACAGTAAAGCATTTTCTGATGGTTATCACCAGGCCACTTCATACCGAGGAATCTGTCTGTGTCACTAATTCAAACCTCGACAATGACGGGGAGACGGCACAGGTGACACCTACCCATGTATACCCATCCATGTGCGTGAAGGGTTTGCTGCGTGAACACGTCCAGCCAATCTAATTGTTTTCATTTGAGGGCAAAATAATTTAAAGTATGTAGACGTTTTAGATATCCGTCCCGTCAGTATAATGATAATATTGTTTTGTAATCATTCCTCTATGTGTCTTTTAGTTTTCCTGCATTAACTAAACGTGAGTTTGGTGGCTCTGTGCTCGCCTCGTCTCTCAGCTCGTCTCTTTGGCTTCATCCGAGAAATATTTAGCAACTTCATAGCAGCGAGACTGACCAGTTGGTCTGTTTGTGGACATCTGTTTGAATGCGGATAGATCAAACAGATTGTCCAAGCTGTCCATGATTGGGTGGCCTGTACTATGCATTAATGCTAGAGGTTGATGTATGTTGTACACCAACTTGGAATTTTCATGGATGTACAGTATGATTTTAGATGAAAGGGACTGATTTAGTTTTCACGCAATTCAGGTCACATACCGTTAACACACAGGGGAATGTTTCTGTATACTTAATGAATCTTTTCTTAACATTTTctgcaaatgtattttttgagCTATAGCGTAAAGCAGACAGAATGGGGTAATTGGTACATTCATGGCCAAAGCAAATGGCATGGCTGCATAGTGGGAACAGTATGATTTAGGAAGTAGGTGTGGTGGGAGTTTTATTTCAGTCACAAGCAATGGAATCACCTCTGTTCAGACAGTGTCATGATTCCAAAGCACTGTGAAGCCCTGGAAACGTGTCTCCGCCTCTCACTATTTGTATAGAAATctcagcatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72980 lncRNA downstream 293870 31998533 ~ 31999072 (-) True G54631
TU72978 lncRNA downstream 300391 31992349 ~ 31992551 (-) True G54629
TU72966 lncRNA downstream 348677 31941687 ~ 31944265 (-) True G54618
TU72956 lncRNA downstream 669612 31623121 ~ 31623330 (-) True G54609
TU72947 lncRNA downstream 792053 31498777 ~ 31500889 (-) True G54600
TU73048 lncRNA upstream 87647 32409506 ~ 32409852 (-) True G54684
TU73095 lncRNA upstream 269124 32590983 ~ 32592616 (-) False LOC120559593
TU73097 lncRNA upstream 274713 32596572 ~ 32597493 (-) True G54724
TU73104 lncRNA upstream 353406 32675265 ~ 32675465 (-) True G54731
TU73106 lncRNA upstream 360303 32682162 ~ 32682516 (-) True G54733
XM_039801985.1 mRNA downstream 823157 31465768 ~ 31469785 (-) False LOC120559902
XM_039801984.1 mRNA downstream 823157 31465768 ~ 31469785 (-) True LOC120559902
XM_039800310.1 mRNA downstream 1101586 31162519 ~ 31191356 (-) False itchb
XM_039800311.1 mRNA downstream 1102084 31162519 ~ 31190858 (-) True itchb
XM_039801623.1 mRNA downstream 1151068 31128228 ~ 31141874 (-) True e2f1
XM_039801012.1 mRNA upstream 60025 32381884 ~ 32390458 (-) False LOC120559355
XM_039801011.1 mRNA upstream 60067 32381926 ~ 32392543 (-) True LOC120559355
XM_039801739.1 mRNA upstream 91205 32413064 ~ 32511065 (-) True cpne9
XM_039799272.1 mRNA upstream 248449 32570308 ~ 32586963 (-) True si:ch211-220i18.4
XM_039799271.1 mRNA upstream 248449 32570308 ~ 32586661 (-) False si:ch211-220i18.4
unassigned_transcript_235 other downstream 1065811 31227060 ~ 31227131 (-) True trnaq-uug_1
XR_005639345.1 other downstream 2227001 30008242 ~ 30065941 (-) False tafa5l
TU73146 other upstream 445498 32767357 ~ 32773486 (-) True G54756
TU73247 other upstream 558334 32880193 ~ 32887290 (-) True G54834
TU73607 other upstream 1702159 34024018 ~ 34127495 (-) False G55124
TU73620 other upstream 1766111 34087970 ~ 34093118 (-) True G55131
TU73610 other upstream 1796045 34117904 ~ 34127495 (-) False G55124

Expression Profile