RNA id: XM_039801425.1


Basic Information

Item Value
RNA id XM_039801425.1
length 8549
RNA type mRNA
GC content 0.51
exon number 39
gene id LOC120559593
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 32590983 ~ 32666459 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATGTCCTGAGTGCTGCGGCCAGACAACAGAGACAGCCTCCGGTATCTgaggtgaacacacacacacacagacacactttctgGACTCTGAGTTTGTTTACTTCTTTCTTTTAGAGCGGCTACTTTATCATAATTGCGCCGTATTCGGAGGAAAAACTAACAGTTCGTGAAAGTAAGTTAGCCTGCCAAGCTGGACCTCATCAGATACTTTCTGCTTGTTAGCGTGGATGCGAGGCTCTCTTTCATTCAACACCATGGACGGCTGATTCACACACTTTACTGACCTCACAGATCACAATCACACACCTCAGACCTTCAACACAGCCAGGCTCCACTCATCAATCATCTTTGATTTTCTGCCAGAGATTCAGATACTGGGAATATTTGCCATGCTACATGGGAAGGCTCTGAACTCCACCCTGCTCTTActcctcatcctcatcatctTTGCCACAGCCCATGGTCGCTCCTACCCTTGTTTTTCCCGTAATGACACTGAGTTCCAGCACCTGGTGCTCCACCCAGACCCCTCTGTGGGAACGGTGTACGTGGGGGCCAGGGACCACCTCTTCCAGCTGGACGGAGCCGATGGACTCCGGCTGGAGCAAGAGGAGACGACCGGTCCCGTGAGCGACAGCAAAGACTGCCTTCCCCCAGTCACCGAGTTGAACTGTCCCCAAGCCAGAAGAACCAGTAATCACAACAAATTACTGCTGGTCGATCCAAAGGCGTCGGAGTTGATCACCTGCGGCAGCATTCACCAGGGCACCTGCCAGAAACGCAGACTGGCATCCATCAAGAAGGTTCTCTTCTCCACCGAGAGGCCCGTGGATACGCAGTATGTTGCAGCCAATGACCCGTCGGTGTCAACCGTAGGGCTGGTGGTTGGGCTTCGTGGCGGGGAAAGGACAGTGATGTATGTGGGTAGGGGCTACACTGCCAGCCACCCGCCCATCTCCACCCGCCACCTTTCATCAGAACCCGTCTTTTCCTACGAGGAGACGGCGAAGCTGGCTGTGGCCGGGCGTCTGTCGGAATACGACCACCACTTCGTGATGGCATTCACACGGCGCGCGTATGTGTACTTCTTGTTTTACCGCCGTGACATCAAGTCGGCATCGAGGGAGTACCGGACCTATGCTGCCAGAGTGTGCTTGGACGACACATCCTACTATTCCTATGTGGAAGTTCCTCTTGTCTGCCAATCCCCTTCCTCTCCGTCAAGGACTTACAACCTGCTCCAGGCTGCTCAGGTGGGACAAGGTGCGGGTCGGGAAGGCGAGGATCTGCTGGGAGTCTTCTCCACCCGCAGCGGCTCCACAAACAGTCCCTTGGATGCCTCAGCTCTGTGCGTTTACCCACTGGATGAGCTTGACAAACACATTGACTCCACCCGTGACCTCTGCTACACCCAGGACGGCCGGgtggagggaagaggagaggtGGCCTACATAGAGTACGAGGTCAAGTCCAGCTGTGCCAACCTGCCCCTGAATACCCTTAAGGCCTATCCCTGCGGCTCCGACCACACCCCCAGTCCAATGGCAAGCCGGGCACCGCTGGCATCTAAAGCCGTGTGGCACACCTCGGCCGCCCGTCTCACTGCTGTGGCTGTCAGTGTCAGAGAGGGACACAGCATCGCCTTCCTCGGAGACTCCAAAGGGACTCTGCACAAGGTATATCTGGGCCAAGATGGCCATGTGGAGGTATATGCAAACACGACAATCCAGGCCAACTCACCCATTAACAGTGACCTTTTATTGGACCAGAATGGAGCACACATCTACATCATGACCAAGACTACTGTAGAGAAGCGTCCAGTGGCAGAATGTGGGGACCACCTGGACTGTCAGTCCTGTTTGTCTGCCAAAGACCCCTACTGTGGCTGGTGTGTCCTGGAGGGACGGTGTGGCCAGCGCTGGGAGTGCCAGAGAGGGTCTGTGCAGGGCCAGTGGCTGTGGAGTTTCAACCAGATGCAGCAGTGCCTCAGTATCCAGCACCTCAGCCTCTACAACATCAGCCGTGGGGAGAAAACTGATATTAGAGTGTCAGTAAAGGGCCTCCCAAGCCTAAGAAAAGGAGAGGCCTACTCTTGCTTTTTCCAGGACACAGAAGCTCCTGCCTCACTCACCAACACTGGTGTGATATGCTCCACCCCTGATGCCAGCAGTCTGCCCCCCATTAGCCATGGAGATGAGTTTGTGATGGTGACCCTGTCGCTGCGTTTCACGAATGTGACGGTAGCAGAGACAGAATTCACCTTCTACAACTGCAGCTTGGTCCAGCAGCTGTCTGGACGCAGGCCatgcCAAGGGTGTGTTGGCAGCCGCTGGGGGTGTAACTGGTGTATCCACCAGCAtgtctgcacacacaaacacacctgcaGCCAAGGAGTCACCATCTACAACCAAAATTTCAAACCGCCAACACCCACCATCCCACCTCCCACCAGAAATTTGACCCCTTTACCTCCTACTGTCCGGGCTGctacaacaaccacaacaacaacaacaaccacagcagcCACAAGCACAACATCACAGCCACCACCCACAGAGACACCTGCCCCCACCACAGCAGCTGTCCCTTCAACTTCCACCACAGTGACACCACCCACCACTTCTAATGCTGAATCAAACTCCCCCCTTACCCTGGCCACAACTTCCCCCTTGGACAGGATTTTCAGCCAGGCCACTACCATACACACCAATGTTACTACCACAAGCGGGTCCCTCCCTGATGCGGAGGGAACTACAGAGGGAAATGCTGGCACTACAAGAGGTTTTTCAGAAGATGAAGTGACTGAAACCTTGAATAGCACTGACAAAACTCCCCACACTACATTACCCAGCAGCACTAGTGGCATGGTAGACCCTGACCTGAGATTTTTAGGGCCATCTGGTGAAGCGCTGGGCTCTTCCTCTGATGTAAGCTCAACCACCTCCAGCGAAGTGTCCCTTTTAATAGACTTCGCTATCAGTGACAATAAGGAGTCCATTCCTCTGGACAGCTCCGAAGAGAAGGACTCCCCTCCGTGGTTGAATGAGTGGGAGAAGCCAGAAGGAGAGACTGACATGGAGTCCACTACAGGTTTATCTGTTGCAGGCGCCAGCGAAAAGCCGTTTATCTATACACAAGCACCTGAAACAGTTATTGACCCCAACTCTGAATCTGCAGCAAACTACCAATCAGATTCTTCAAATGACCTTTATTTTCTGGAATGTCCGTGTGTGGAGAAAGTTCAGGATTCTTCTCTTCTCCCTGTCAATGTGGAGAGGAAAGTCACTCTGGTGGGACAACACCTAAACCTGTTTCAGGATGAGAATTTGGACTACGAGTGTGTTTTGGACATTGAGAATCAGTCAGTGGTGGTGGATGCCTCCGTGGAGCCGGATGCCACTCAACTATCGGTCTTCTTTATCTCCTGCCAACCCCACCAGtATGCCTATTCTGCCTTGATGGAGGAATACCCAGCCATGATCAACGTCAGGAGAAAAAACAACTTCCTGATCGACAGCGCTGAGGATCtgtatgTGACTTTATTCAATTGTTCAGTGGGGCGGTCAGACTGCAGCCGATGTCGTACTGCCGACCCGAAGTACAGCTGTGTttggtgtggtggtggtggtgctgctAGCTCTCACTGTGTGTACCAGGACTCCTGCACAGAGGAGATCAAACTCACCTGTCCTGCACCCGTCATTCATTTCTTGGACCCGGTATCCGGTCCCGTAGAGGGAGGCACAGTCGTGACCATTTCAGGCTCTAACCTCGGCCAGAGAGCTGAAGACATTCAGAACTCGGTCACAGTAGCCGGGGTCCCCTGCAGTGTCATCCACAGCAGATATGAAGTCTCCTCAAGGATAGTGTGTGAGACTACAAGCAGTGGAGGAGAGAAGAGCGGCCAGGCCTCAGTCAAAGTGAGGGGAGGACAACTCGGACTATCTGCTCAGATCTTCAGCTTCCAGGACCCGGTACTAAGCAGCATCTTCCCCCAAAGAGGGCCCAAGGCCGGGGGCTCCTCCCTCACCATCAGAGGCCAGAGACTGAGGACTGGACACCCGAGTGAAGTCAGCATCCTGATAGGAGGAGTGCCATGTATTGTGCTGAGCATCCAGGAGGATCAGATCAGCTGTCTGACCAGAGGCAGCAACAGAACAGGAGAACATGGCATCACCGTGCGGTTTGGTGGCACAGAGCGACACCTACAGGGTTTGGTGTATCATTACACCCCCAACCCCAACATCTCAATGGCTGCTCCGTCGAAAAGCTTCCTCAGCGGAGGCCGCATCATCAGAGTTTCTGGTCAGAACCTGGATGTGGTCCAAGAGCCAAAAATGAGGGTCACCCTCAGTCCTCCTGATACTCTCCCTCCCAGGAGGAGAAGGAGCTTCAAAGGGAGGAATGAAGGAAGCTCGAACAGAGGACAGGATCGCCGGCGTCCACtgaagagatggaggaggatcGTCCCCGAGGCGGACTGCCCCGAGGGTACACTCTGTCACGTCAAACAGTACGAGTCTCTCTGCACAGTGAACGGCTCCTCCCTCATCTTGTGTCCGACTCCGGCAGTGGGTCCAGAGGCCAGGAGGGCCAGGGTCCGAGTTCATTTCCTGTTGGACAGCCTCCATTTTGACTTCAGCACTGTGGGGAATGAAGCCTTCAGCTATGAGCCCAACCCGCAGCTCTACCTGCTGAACCAGAACGATCCCAGCAAACCGTACCACCACAAACCGGGCAGCATCATCTCTGTCGAGGGAGAGGACCTGGATCTAGCCATCTACAAGCATGAGGTGGAGGCTCGGATCGGGGCGGGGGTGTGCTCGGTGAAGACCCTGACCCACAACCACTTGTACTGTGAACCCCCGGCTCAACAGCCCTCAGTCACAGCCAGCAAGAAACTGGACGGCATGGACAGTCTGCCTGAGTTCACAGTGAGAATGGGGAATCTAAACTTCTCTCTGGGCAGAGTGCAGTACGACAGCCAGGCCCAGTCTACATTTCCTCTGGAGGCTCAAGTGGGAGTCGGGGTGGGAGCCTCCATAGTGGCTCTCATTGTGCTCATCATAGTCCTCATATACAGGAGGAAGAGCAAACAGGCCATGAGGGACTACAAGAAGGTGCAGATCCAGCTGGAAAACCTGGAGACCAGTGTGAGAGACCGCTGCAAGAAGGAATTCACAGACCTGATGACAGAGATGATGGACATGTCCAGTGATTTGGTGGGTTCAGGGATTCCCTTCCTGGATTACCGGGCATATGCCGAGCGCATTTTCTTCCCAGGCCACCGGGATTCACCCCTGAGACGAGATCTGGATGTCCCCGAGAGTCGAAGGCAGACCGTTGAGCAAGGGCTGGTTCAGCTGTCCAATCTGCTCAACAGCAAACTCTTTCTCACCAAGTTTATTCACACTCTGGAGGTCCAGCGGACATTCTCCCCAAGGGACCGGGCCTACGTGGCCTCTCTGCTGACTGTAGCCCTGCATGGTAAACTGGAGTACTTCACAGACATCCTGAAGACACTGCTCAACGACCTAGTGGAACAGTATGTGGCCAAGAACCCCAAActgatgctgaggagAACGGAATCGGTGGTTGAGAAGCTTTTGACAAACTGGatgtccatctgtctgtttaCCTTTCTGAGGGAATCAGCAGGGGAGTCCTTCTACATGCTGTTCAGAGCAATAAAGCACCAGGTGGACAAGGGACCTGTGGACGCTGTGACAGGAAAAGCCAAGTACACACTGAATGACAACAGGCTGCTGCGAGAGGACGTGGAGTACCGCACGCTGACCCTGAATGTTGTGATGCCAGCTGCCTCCGCCAGCGGAGGCGCTACCACTCAGACGGTACCGGCCAAAGTCCTGGACTGTGACACCATCACCCAAGTGAAAGAGAAACTTCTGGAACAAACCTGGAAGGGAACCTCCTTTTCCCAGAGGCCACACATTGACTCATTACATCTTGAGTGGCGTGCAGGTGTTGCAGGTCACCTGATCCTATCAGATGAGGACCTGACATCTGTAGTACAAGGTTTATGGAAGCGCCTTAATACATTGCAACACTACAAGGTTCCTGATGGAGCAACGGTCGCCCTCGTCCCCAGGAACAACAAAAATCACCTCCATGACAGCCACGATTACATGCCTGGAGAAAAGACCCCTATGCTGGATgatggggaggagggaggagtgaggcTTTGGCATCTGGTGAAAGCTAGTGAGGAGTCGGAGCTGCCCAAGCACAGGAGAGGTAGTCTGAGGGAGAGGGGCGGCGAGAGGGCCAAGGCTATCCCCGAGATCTACCTCACACGACTGCTCTCCATGAAGGGCACACTGCAGAAGTTTGTGGACGATTTATTCACGGCGATCCTCAGCACCAGTCGCCCTGTACCTCTGGCCGTCAAATACTTTTTCGACTTGTTGGATGAGCAGGCTCTGCAGCACAACATCACGGACCCTGAAACCATCCACATCTGGAAAACCAACAGTTTACCGCTGCGCTTCTGGATCAATATCCTAAAGAACCCTCAGTTCATCTTTGACGTGCAGACCTCAGACCACGTGGATGCTGTGCTGTCCGTCATCGCCCAGACCTTTATGGATTCCTGCACCATCGCTGACCACAAACTGGGACGGGACTCTCCCATCAACAAGTTGCTGTACGCCAGAGACATCCCGCGCTACAAACAGATGGTGGAGAGgtACTATGGAGACATCCGTCAGACCATCTCCGCCAGTGACCAGGAGATGAACTCAGCTCTAGCAGAACTCTCTCGTAATTACGCTGCTGAGGTCAACTGCCTTGTCGCTTTACATGAGCTGTACAAGTACATCAACAAATACTACGATCAAATTATCACAGCCCTGGAAGAGGACTCCACAGCCCAGAAGATGCAGCTTGGTTACAGGCTCCAACAGATAGCTGCTGCTGTAGAAAACAAAGTCACAGACCTATGACCCAAAGGAGgggagtttttttctttctttctttaacctGGAAAAGAGGACAATAATGGGAGAAGATGCTGTCTCCTGGaggaaaaaagtatttttttttttttttttttaagacaaaggCGGACAAGAATCATTGTGGCACATACTGTGATTTCCATCATTTTAAAAAGACAGCTTTTTAGTGAAGGGAGAAATTATCTTAAAAGGGATCACTGACACTGGCCATGTTTCCTTTTCCGTATCCAGGGGCTACAGTACGACTCCCTTGACATTTCCACAGGTCCTAACACTGGGAGGAAAGTGACACCGCTCTGCAGGGAAACAACAAGAAATCGTGACATTAAGCACATTGTGTCCCATGTTGCATTCAAACTAAAGGGAGAAATAATATGAAAagagacctttctgtttttcCTCTGCGTCTACAGTATGTGTCTCAGTGGACTTGGAGGGTTTGTTGACAAACTACACTGAACATTCCGGCAAGTTTACAGCTATACTTATCAGTCCTCTGCTGAGGAATGGATTCAGTGGGTGTGCTGGATAAGGAAACCGTTGACgaggaggagaaaggaaaaGGAGGACTTTCATGTTGACAGCTGTGGCGTTTTCTACTACGTTATGTCAAAGTCTTACATAAAGGACGGACAGGTAATGCCAATGTGCTGTGGAGGTCCTGAGCAACCGCTTAACGTATTTGAAGGTTGTTTTCATTCTGCTTTTAGCTTCCCTAAATCATTCTACCAAGTCTTACTCCATGACGTTTAATTAGCTGTTATTGGACAGTTTGTCGTTCTGTGTAAACCGTTTCCCCGGGTCgactttcttctttttattttatttttatttttttaagctttgcAACGCCAGTTGTCCTTTTTAATGCGATATGTAGATGCTGCCTGTAGTTCAAACTGAAAACCAGTGTTTTGTAAGAGTGTTGATTTTCGTTTGTTGAGGACGTAGTACATGAAGACTCTCAACCTGCTTTCTTCTCCCGATGGCCTACTGCTATTGTGACTGTTCCTTTTCTTAGGTAATGTTCCGCAAATGTTGATATCATTTTTTGCAAacaattgtttttatatatattacccCAGACAATTTGGCAGAGGTACTTATAGCTGACTCATTAACCGATCCGTCCTCAAGAAAACCATGAAAGTAAGATCTTTACATATTGACAAAATCCATAACAGCACCACTGAAATCTGTAGTCATTTATTGAAAAAGAGGTGATCTTATCGCTTATGACAGACCAAGCCTGACTTGTTAAAAGATTAAATGCACAAATATCTAAATAATGCACAAATGAATTTGTGCAGTGAGGAATATTTATGTTTTACTGCCACTCACAGTATTTATTTCCCTTCCCCGTTTTCCATTTTTGTAACATGTTTTCTTCCACAGgatgtttttttcatgtgtgATTGACCTTAACAGTTACTTCTCACATTTGTGCATTTCATAGATGTATTTAAATTGCtttgacttttatttaagtCAGGTTTGACCTTCCATATGTCTAAGATATTTCTGCTATCGTATACACTATACATTATATTCCGTTTTTGGATTTACAATTTT

Function

GO: NA

KEGG:

id description
K06821 PLXNB; plexin B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73048 lncRNA downstream 182686 32409506 ~ 32409852 (-) True G54684
TU72980 lncRNA downstream 593466 31998533 ~ 31999072 (-) True G54631
TU72978 lncRNA downstream 599987 31992349 ~ 31992551 (-) True G54629
TU72966 lncRNA downstream 648273 31941687 ~ 31944265 (-) True G54618
TU72956 lncRNA downstream 969208 31623121 ~ 31623330 (-) True G54609
TU73104 lncRNA upstream 8837 32675265 ~ 32675465 (-) True G54731
TU73106 lncRNA upstream 15734 32682162 ~ 32682516 (-) True G54733
TU73107 lncRNA upstream 16932 32683360 ~ 32686614 (-) True G54734
TU73108 lncRNA upstream 21777 32688205 ~ 32688638 (-) True G54735
TU73272 lncRNA upstream 300207 32966635 ~ 32967363 (-) False zgc:158296
XM_039799272.1 mRNA downstream 5575 32570308 ~ 32586963 (-) True si:ch211-220i18.4
XM_039799271.1 mRNA downstream 5877 32570308 ~ 32586661 (-) False si:ch211-220i18.4
XM_039799273.1 mRNA downstream 5966 32570308 ~ 32586572 (-) False si:ch211-220i18.4
XM_039799274.1 mRNA downstream 5967 32570308 ~ 32586571 (-) False si:ch211-220i18.4
XM_039801739.1 mRNA downstream 81473 32413064 ~ 32511065 (-) True cpne9
XM_039799643.1 mRNA upstream 22459 32688887 ~ 32694442 (-) True LOC120558593
XM_039799644.1 mRNA upstream 54405 32720833 ~ 32726627 (-) True krt8
XM_039801894.1 mRNA upstream 225837 32892265 ~ 32903713 (-) True tmem106c
XM_039801314.1 mRNA upstream 244330 32910758 ~ 32933014 (-) True sars1
XM_039801313.1 mRNA upstream 257422 32923850 ~ 32927539 (-) True LOC120559545
TU73036 other downstream 270586 32316960 ~ 32321952 (-) False LOC120558955
TU73035 other downstream 279760 32306922 ~ 32312778 (-) False LOC120558955
unassigned_transcript_235 other downstream 1365407 31227060 ~ 31227131 (-) True trnaq-uug_1
XR_005639347.1 other downstream 2526598 30008242 ~ 30065940 (-) False tafa5l
TU73146 other upstream 100929 32767357 ~ 32773486 (-) True G54756
TU73247 other upstream 213765 32880193 ~ 32887290 (-) True G54834
TU73607 other upstream 1357590 34024018 ~ 34127495 (-) False G55124
TU73620 other upstream 1421542 34087970 ~ 34093118 (-) True G55131
TU73610 other upstream 1451476 34117904 ~ 34127495 (-) False G55124

Expression Profile