RNA id: TU73391


Basic Information

Item Value
RNA id TU73391
length 1464
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G54947
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 33504813 ~ 33507223 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agaactacgcactgtagctttaaaggggtgatagaatgattatatagggtatttcacactgttccttaaggtctcctaatggggtatgtaacattggttgggctgaaaatggcctggttgatattttattggcccttatgcatccctgtgttttggccctatttgtaacaagagcttttcttccaaagatggtatgctcattaatatttagatgagctgcgcgctgattggttgagcgaatcccaatacacacacacattagagacgcgacagaatctcatattccagacactgcaatgtttcattaccaaattcacttctgagacttttttatgcgagaaatcaactatataaaactcaaatatgggccattttatgaaaatgtatggctaattgcaaatttggtaagacgtgtcggactttaggagctccacacagtctgatgagaaagcggcagcctactgggctccatacccagggcaaagtcaccctttgtggattactgcactaccggggctccgtggccggctgccggcataattataatatatttacagtttgaattttgtcacaacacttatatcacagctaccccaaggtcttacaaagctaacaaaaactaacagtccgatttgaatttaaggcatttttatgaacggggtcttgttaggaggagcagctagctagctatgtgtcccattcaatacaatggggaaagatcgcggctagctagctacactttcggcataattatagtatatttacagtttgaatttcgtcacgccacttatataacatctaccccaaggtcttataaaacaatggtgtcagatttcaatttaatgattttttgtgaacactaggggttttgttagctgcgactgtccctttaatcctatgtgtacagattgcggctagttacaTAGGATCCGATTTCAATTTGATGAATTTTTGTgtatttcagaggaattctaagaggctagctagctgtcattgatagagctccatccagccgtaggctctatcaatgagactcgatgacaagaggcgtttatttcaccgatcgtttgtttaaataactcaaataacattataattacacacataagattaactggaacctgtggtaagagattgctggcgtaacaagctcgttgaccgcactctcactcacacacaccggccatttagcaggaagaggggagctgcaggccctggagctctgtccaggcagcggcgtttggtagtccattaacccaaaaaactgtgactttgcgcgggtatggaatgccgtgggctgccagccgtgacggagctcaatctagctcacagcaggccggggtctgtgaaggaaggcaggccaggcggcgaggaagcagctcttgagggaattactgtaattgttgggtctttgtaaattgtagagtgtggtctagacctactctatctgtaaagtgtctcgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73354 lncRNA downstream 185789 33318820 ~ 33319024 (-) True G54922
XR_005639088.1 lncRNA downstream 195889 33308131 ~ 33308924 (-) True LOC120558313
XR_005639133.1 lncRNA downstream 321495 33173866 ~ 33183318 (-) True LOC120558525
TU73290 lncRNA downstream 321495 33174419 ~ 33183318 (-) False LOC120558525
TU73272 lncRNA downstream 537450 32966635 ~ 32967363 (-) False zgc:158296
TU73393 lncRNA upstream 86 33506362 ~ 33507223 (-) False G54947
TU73395 lncRNA upstream 1158 33507434 ~ 33508423 (-) True G54949
TU73443 lncRNA upstream 49524 33555800 ~ 33557659 (-) False lamb2
TU73444 lncRNA upstream 49524 33555800 ~ 33557570 (-) False lamb2
TU73500 lncRNA upstream 244013 33750289 ~ 33757122 (-) True G55034
XM_039801391.1 mRNA downstream 34507 33323805 ~ 33470306 (-) True LOC120559567
XM_039801962.1 mRNA downstream 210333 33271132 ~ 33294480 (-) True LOC120559885
XM_039801991.1 mRNA downstream 264385 33221464 ~ 33240428 (-) True LOC120559907
XM_039801586.1 mRNA downstream 431735 33068885 ~ 33073078 (-) True pim1
XM_039799351.1 mRNA downstream 483469 33016489 ~ 33021344 (-) False zgc:103759
XM_039801971.1 mRNA upstream 2412 33508688 ~ 33524809 (-) True si:dkey-32e6.3
XM_039799429.1 mRNA upstream 19579 33525855 ~ 33554185 (-) False usp19
XM_039799430.1 mRNA upstream 19579 33525855 ~ 33554184 (-) False usp19
XM_039799428.1 mRNA upstream 20899 33527175 ~ 33554185 (-) False usp19
XM_039799427.1 mRNA upstream 20899 33527175 ~ 33554185 (-) False usp19
TU73247 other downstream 617523 32880193 ~ 32887290 (-) True G54834
TU73146 other downstream 731327 32767357 ~ 32773486 (-) True G54756
TU73036 other downstream 1182861 32316960 ~ 32321952 (-) False LOC120558955
TU73035 other downstream 1192035 32306922 ~ 32312778 (-) False LOC120558955
unassigned_transcript_235 other downstream 2277682 31227060 ~ 31227131 (-) True trnaq-uug_1
TU73607 other upstream 517742 34024018 ~ 34127495 (-) False G55124
TU73620 other upstream 581694 34087970 ~ 34093118 (-) True G55131
TU73610 other upstream 611628 34117904 ~ 34127495 (-) False G55124
TU73658 other upstream 784130 34290406 ~ 34290887 (-) False ntsr1
XR_005639223.1 other upstream 1763622 35269898 ~ 35277854 (-) True LOC120559165

Expression Profile