RNA id: XM_039799431.1


Basic Information

Item Value
RNA id XM_039799431.1
length 6859
RNA type mRNA
GC content 0.52
exon number 36
gene id lamb2
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 33555800 ~ 33614940 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTTGAGGACTTCTCATCGCCGCTCAGCCTCGCATCCGTCCGGGCAACTCCGCAGCAAGTGGACCGAGAGGGAGACGGTAGTCGTACACAACACAGACTGAAACAGCACGGTTGCCTGCAGCCGGGTTGAGGTGTGCTTGGAGATGCAAGCGTCTCTGGTAATGCTCGTCTGCGTCCTGGCTGCTGCCGTTGGCCAGGAGCCCGACCACAGCCACGGCTGTGCCCATGGCAGCTGTTACCCAGCAACAGGGAACTTGCTGGTTGGACGAGAGAAGAATCTGAAGGCCTCATCCACATGTGGGATGAGGAAAAAAGAGCCCTATTGCATTGTTAGTCATCTGCAGGATGAGAAGAAGTGCTTCGACTGTGACTCTAGACGGCCATATCACCCAGTGTATAACACCATCAATCACCGGATAGAGAACGTTATCACCACCTTCAAACCTCAACGCAAGAAGTCCTGGTGGCAGTCCGAGAATGGAAAGTCCGATGTCTTTATCCAGCTGGATCTGGAAGCTGAGTTTCATTTCACTCACCTGATTATGACTTTCAAGACCTTTCGTCCGGCGGCCATGCTGATTGAACGGTCGGCAGATTTTGGTCGAACCTGGAAGGTCTACCGCTACTTTTCCCACGACTGCGCTACTACCTTTCCCAGAGTCTCCCAGGGTCTTTTGCGTAACATTAATGATGTCATCTGTGAGTCACGCTACTCTGACATTGAGCCGTCAACAGAGGGAGAGGTCATCTACAGAGTGTTGGATCCAGCCATCAATATTGAGGATCCATACAGCCCGAGCATCCAGAACCAGCTGAAGATCACGAACTTGAGAGTGAACTTTACCAAGCTTCACACACTAGGAGACAACTTGCTGGACCCCAGAGCTGAAATCAAAGAAAAGTATTACTACGCCATATATGAGCTTGTTGTTCGCGGAAACTGCTTTTGCTATGGCCACGCCTCGGAGTGCGCCCCCATCACTGGCATCAGGGATGATATAGAAGGAATGGTTCACGGCAGGTGTGTGTGCAACCACAATACCAAGGGTTTGAACTGCGAGCAATGTGATGACTTCCACAACGACCTTCCCTGGAGACCAGCTGAAGGGCGCAACACCAACGCTTGCAGGAaGTGTAACTGCAATGGCCACTCGACCATGTGCCACTTTGACATGGCGGTGTATTTGGCCATGGGAAACGTCAGCGGAGGAGTGTGTGACGACTGTCAGCACAACACTATGGGACGCAACTGTGAGATGTGCAAGCCTTTCTACTACAAAGACCCTATTAAGGATATCAGGGACCCACAGGTCTGCATAGCTTGTGATTGCGACCCAGATGGTTCTCAGAATGGAGGCATGTGCGACAGCCACACCGACCCTTCCCTCGGCATGTTGGGAGGTCAGTGCCGTTGCAAAGCCAATGTCGAGGGGCCGCGCTGCGACAAGTGTAAGACTGGCTTCTTTGGCCTGAGTGCTGACAACCCTCAGGGCTGCCAACCTTGCCAGTGTGACCACAGGGGAACAGTGTCAGGTAGCTCCCAGTGTGACCCAGTCAGTGGAGACTGCTTCTGCAAGCGTCTTGTCACTGGACGCAGCTGTGACCAGTGTTTGCCAGAACACTGGGCTCTGAGCCACGACCTAAACGGCTGCCGAGGCTGCGAGTGTGATATCGGAGGAGCCCTGGACAACCACTGCTCCATGGAGAGTGGTCAGTGTCGCTGCCGCAGTCACATGACAGGACGCCAGTGTACACAAGTGGAGTCTAGATATTTCTTCATGGCTCTGGATCACTTCCTGTATGAGGCTGAGTTTGCCAAAATGGGGCAGGGCTGTACATTGGAGACCAGGGAGCACCAGCCGGGTCGCCCCGCCACATGGACGGGTGTTGGGTTTGCTCTGGTACCTGAGGGTGGCACTCTGGAGTTCCTAATCAGTAACATCCCCTACTCCATGGAATATGACCTGCTCATCCGCTATGAGTCACAGATGCCCCGAGACTGGGAGGATGTACAAATAACAGTGATCCGTCCGGGCCCGATTCCTACCAGCAGCCCCTGTGGAAACACCATCCCAGATGATGACAGACTCACTGTCTCTCTGCCGACTGGAGCCAGGTTTATGGTCCCTCCTCAGGCTGTGTGTCTGGAGCGAGGTGTGACTTACACCCTCCGCTTTGAGTTCAGACGCTATCAGGATGCCAACAGCATCCTCAATGGAGCAGCCAACGCTGTCCTTCTTGTGGACTCTATTGCCTTGATGCCACGCCACTCCTCCATGGAGATGTTCAACGCAGGGGATCCTGCTTCTAACAACAGGAAGCAGACCTATGAGCGGTACCGCTGCCATGAGGGGGCTAAGAGTGTAACCCGCCCACTGATGAGTGACACCTGTGCCAAGCTAATCACCAGCATGTCAGCTATCATTAATGACGGGGCTCTGTCTTGTAATTGCGATCCTCAGGGTTCCATCAGCGCCATGTGTGATGTCCGTGGGGGCCAATGTCACTGCAGGCCCAATGTGATTGGTCGACGCTGTGACCAGTGTGCTCCTGGAACTTACGGCTTTGGACCCTCAGGCTGCATAGCCTGCAGTTGCAGCTTGGAAGGCTCTGTGACTCGACTTTGTGACAAGTTCACCGGTCAGTGCCAGTGCCGCCCCGGAGCGTTTGGTCAGCGCTGCGACGGATGCCAGGCGGGTCACTGGGGCTTCCCCAGCTGCCGACCCTGCCAGTGTAACGGACACGCCGACGTGTGCGACCAAAGGACCGGAGCCTGCGTCAACTGCAGGGACAGTACTGGAGGAGACAAGTGTGACAGGTGTGCCAATGGTTACTATGGTAACCCCGTTTTGGGAAAAGCATCCAGTGGTCAGTGTCGCCCGTGCCCCTGTCCCGACGGCCCCAACAGTGGACGCCACTTTGCTGCATCTTGTTACCAGGACAACCGTAACAGACAAATTGTCTGCAACTGTAACCAGGGTTACACAGGGATTGTTAAACGCTCCGGGGTGACCATTTTTAAGCGAGCCCGATGTGAGGAATGTGCCCCGGGTTATTATGGCAACCCCTCTCAGCCCGGCGGGCGCTGCCAGCCGTGCCAGTGCAACAACAACATAGACATGTCAGACATGGATGCTTGCAACAGGCAGACCGGGGAGTGCAGAAAATGCCTTTACAACACTGAGGGCACCAACTGTGGCATCTGCAAGAGCGGCTATTTCGGGGACGCTTCGCGACGCAACTGCAGGAAGTGCACATGTAACTTCCTGGGTACTGACAGCAGCCAGTGCATGGAGCGTGAGGACTGTGTGTGCCAGCGTGCCTCAGGGCAGTGCCAGTGTCTACCAAATGTCATAGGTCTGCCATGTGACCACTGCGCCCCCAACCACTGGAACCTGGCCAGCGGGAGAGGCTGTGAAGCCTGCGGCTGTGATCCTAACAACTCAGTCACCTCTTCATGTAACGAGTTTACTGGGCAGTGTCAGTGTCGTGACGGCTTTGGCGGGAAGACCTGCACAGACTGTCAGGAGAACTACTGGGGAGACCCCAGGACACAGTGCAGAGCTTGTGACTGTGACTGGCGTGGCATTGAGACCTCTCAGTGTAACCGGGTGACCGGCCACTGTGTCTGCCAGCAGGGGGTGTCGGGTGTCCGCTGTGACCAGTGTGCCAGAGGCTTCGCTGGCCAGTTCCCCGACTGCAAACCCTGTCATCAGTGCTTCGGGGACTGGGATCGCATTGTGCAGGACCTGGCAGTGCGTACCAAGGCTCTGGCAGAGCGTGCCCACGAGATTCAGACCACTGGGCTTACCGGGGCCTATGAGAAGGCCTTTAGGGACCTGGAGGAGAAACTGGCACAAGCTCAGGGCATTGTCAACGCACGCAATGCCACTGCTGCAGCCGTCGCTACCCTAATGGAGCTTATTGAAGAACTTAGAGCACAGATCGGCGAGACCACTGACACCCTGAACCGTCTGGAAGGAGACCTAACCATCGTCCAGGACAGCAACTCGGAGGCAAGCAAGGAGCTGAGTGCTCTGGAGAGAGAGGCTAAAGAACTAAACCTCACTTCGGAGCAGCTACACCGCCAACTGGATATCCTCAAAAACTCCAACTTCCTagGTGCGTACGACAGCATCCGTAGCTCCTACAACAGGTCTTGTGATGCGGAGCGGCGCGCCAATGAATCAACAACCACCAAGCCCAGCACAGTCAGCCAATCTGCAGACACTCGCCGCCGTACCGAGCGTCTCATCGCCGCCAAGAAGGACGACTTCAACCGTAAAAATGCTGCTAACAAACGTGGTCTTGTAGACCTCAACAACAGAGCACAGGGCCTGGACTTGAAGAAGATCAATGAGAAGGTGTGCGGCTCCCCGGGTGATGCTCCCTGTGAGGAAAGTCCTTGTGGGGGTGCAGGTTGCCGTGACGATGAAGGGAACCGTCACTGTGGAGGCCTAAACTGTAACGGCGCTGTAGCAGCAGCTGACAATGCCCTGGAGGGAGCCAAACACACTGAGAAGGAGCTGAACAAAGCTATAGGAGAGGTGGAGGGACTCTTTACCAAGGTGGCAGATGCCAAGACCAAGGCAGAGGAGGCCAAGGGTAAAGCCCAAGCAGCTCTGGACAAAGCCACCGCCACCAAGAACAAAGTGGAGCGCTCCAACAATGACCTGAGAGACCTCATCAAACAGATCAGAGACTTCCTCACTCaggaGGGCGCAGACCCAGACAGCATTGAGGCAGTGGCGAACCACGTGTTGGAGCTCTCCATCCCTGCTTCACCCCTTCAGATCAGACATCTTGCTGATGAAATCAAGGAACGGGTTCGCAGCCTTTCGAATGTGGACGCCATCCTGCAGCAGACACAGGATGATGTCCGCAAGGCCGAGCAACTGCTGCTGGATGCCAAGAGGGCAAGGCACAgtgctgaggaggtgaagacCACAGCAGAGACAGTGAAACAGGCCCTGGTGGACGCGAAGATTGCCCAGACATCAGCAGAGAAGGCCATAGCGAGAGCCAAAGCTGACATTGGGGAGACTGAAACCCGACTGGCACAGATTGAGTCGGAGACGTCCAACAGTGAGAAGAACCTGAATGATGCCATGGACCGCCTGGGCACACTGGGACAGGAGATTAATGCCCTGAAGACCAAACGTGCCAACAACAGCATGGCAGCCGCCCGAGCCGAAGAGACAGCCACCATGGCACGAGACAAAGCAAATGAAGccaagcagATTCTAGACGGCCAGCTGACCGATAAATACCATGAAGTGCAGCAGCGGGTTGACACAAAGGCCAAGGCTGTGCAGGATGCCAAGAAAAGGGCCGAGAGCCTCAGAGACGAAGCAAAGGAACTACTGAAAGATGCCCAGAACAAGCTCCGGAGGCTAGCAGAGCTGGAGAAAAACTATGAGGAGAACCAGAGGAGGTTGGAGGGGAAAGCTCGTCAGCTGGACGGCTTGGAGGACAAGATGAAAGCCATCCTCAATGACATCAACAAACAAATCCAGATCTACAACACATGCCAGTAACTCACTACTCCTGtcatatgtcataaaaaaacagGTGCATCATGGAATTACTCTGGCATTTTCTCCAGATAACCGTACATTAGACTTTGAAGAAACAATTGAAAAGATGGCTGGGATGGTTATTTTATCGCTCTGCAGGTGAATTTGCATATTTTGGGTACAAACTGTGTAGGTAAGACTTTAAAATGGTTGttatcatatttatatatatatatatatatatatatatatatataaaaatactctGAGCTAAACGTGAAAAGGTTGTCTGATATCacatatttaattttaatttgtgcacattatttgatttttgattttcaaaataatctgaaaatttgtgttttgaacattaaacattaaaatgctaTCTTAAAAAGGTCAATAATACTCAGATTTGGGTGAAAGTTATGCATTGCAAACAAtctgtagtttttatttttttacttagaGTGACTGTTGTATAATCAGCGGGTGAATATCAGTTTCTTTCCATTTTCTATGAAGTCTGTGTTATTACTAGAAGTATATTCTGAGCTGTGCTCATCACAAGAGGACTTCATTTAAACTGCACTGGACAGTGCCTTCTTTCAAAATGAAacaacttttgtgtgtgtgaggacatACAATCAGAATGACAATCTGTTTAAATTTAACTAGATTTTTGGTAAAGATCACTAAAAGGTTAAAATGATAAAGCTGTGCAGAcggtcatggaaggcttgtgtcatgtggacgcgccaacagttttgttgtctttacttagaattcctcatgggggcggcagaaactacgcactatagctttaaccagccccccaaaaaaactctGCCTGGTGTAGGAGGATGGCTGCACACTAATATACGCAGAAACAATGTTATAATGAGAGCAGTGTAAGCTTACAGTGTAGCAGCGCAGCTCTAGTGAAGCTATTATCAGTCTGTATGGGTGAACATTGGTCCAGTAAAAATACCTCAACAACTGTTGCGTAGAACTGatgaaacaaatacattatgGTCTAGGTGAGCCTGACAAGCTGAGTCATGTTCTGACTTGGTCGCTGTTATTTAGGTAACAAAATGTCATTCTCTCTGGCAACACCCTCAGGACAAACTCAAAGGACAAGTTAGCCACTTAGAGAAATaggcttatttgctttcttgccaagagtaagataagaagattgataccacacaCTGTAGGATTAGAGAtagcccgataccattttttgcttcccgataccgattccgatacctgaacttgcgtatcggccgataccgagtaccgatccgataccagtgtgtcatatattttattatgtt

Function

GO:

id name namespace
GO:0070831 basement membrane assembly biological_process
GO:0016203 muscle attachment biological_process
GO:0061053 somite development biological_process

KEGG:

id description
K06243 LAMB2; laminin, beta 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73395 lncRNA downstream 48258 33507434 ~ 33508423 (-) True G54949
TU73393 lncRNA downstream 49458 33506362 ~ 33507223 (-) False G54947
TU73392 lncRNA downstream 49992 33504868 ~ 33506689 (-) True G54947
TU73391 lncRNA downstream 50405 33504813 ~ 33506276 (-) False G54947
TU73354 lncRNA downstream 237657 33318820 ~ 33319024 (-) True G54922
TU73500 lncRNA upstream 135349 33750289 ~ 33757122 (-) True G55034
TU73523 lncRNA upstream 216109 33831049 ~ 33831559 (-) True G55050
XR_005639136.1 lncRNA upstream 242511 33857451 ~ 33875420 (-) True LOC120558540
TU73569 lncRNA upstream 251014 33865954 ~ 33951682 (-) True G55093
TU73568 lncRNA upstream 301155 33916095 ~ 33950009 (-) True G55092
XM_039799428.1 mRNA downstream 2496 33527175 ~ 33554185 (-) False usp19
XM_039799427.1 mRNA downstream 2496 33527175 ~ 33554185 (-) False usp19
XM_039799426.1 mRNA downstream 2496 33527175 ~ 33554185 (-) False usp19
XM_039799425.1 mRNA downstream 2496 33527175 ~ 33554185 (-) True usp19
XM_039799430.1 mRNA downstream 2497 33525855 ~ 33554184 (-) False usp19
XM_039801162.1 mRNA upstream 3683 33618623 ~ 33684274 (-) True lamb2l
XM_039801163.1 mRNA upstream 3683 33618623 ~ 33647865 (-) False lamb2l
XM_039801161.1 mRNA upstream 4257 33619197 ~ 33669639 (-) False lamb2l
XM_039799262.1 mRNA upstream 81907 33696847 ~ 33710767 (-) True si:rp71-17i16.5
XM_039800458.1 mRNA upstream 115390 33730330 ~ 33731472 (-) True LOC120559034
TU73247 other downstream 669391 32880193 ~ 32887290 (-) True G54834
TU73146 other downstream 783195 32767357 ~ 32773486 (-) True G54756
TU73036 other downstream 1234729 32316960 ~ 32321952 (-) False LOC120558955
TU73035 other downstream 1243903 32306922 ~ 32312778 (-) False LOC120558955
unassigned_transcript_235 other downstream 2329550 31227060 ~ 31227131 (-) True trnaq-uug_1
TU73607 other upstream 409078 34024018 ~ 34127495 (-) False G55124
TU73620 other upstream 473030 34087970 ~ 34093118 (-) True G55131
TU73610 other upstream 502964 34117904 ~ 34127495 (-) False G55124
TU73658 other upstream 675466 34290406 ~ 34290887 (-) False ntsr1
XR_005639223.1 other upstream 1654958 35269898 ~ 35277854 (-) True LOC120559165

Expression Profile