RNA id: TU73523


Basic Information

Item Value
RNA id TU73523
length 487
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G55050
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 33831049 ~ 33831559 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATACAAATCGTTTAATTTTATACAAACAATCACAGGTGTAGCAGTTAAACCTAAACCCATCTGACAACCTTGTTAATGTAAATTTCAGTCAGCTGTCTGGACTGGGAATgcactttgttcaaaattcATCGAAGAGGGGGATGGGAATGTAAAGCACTATGTTCCTTCAGTATTCCGGACGACTACTGGCAGAGAATGGTTTCATATTTACCGCtaacaggggagagagagatgtctCCCTTGTCATTTGCCGTCATGTCACTGTCTACCAATTAAAGACAGCGACGTTAAGAGTGAAATGAACACTATATGACTGTCGGATGTCCAAAATGATTACATCACTGATCATGTCGTGGCGAAGAGTGTGATCAGTCCTTTCACGAACGACACAATCTCGTTCCCTCCAAGTTTGGACTCTCCATAAACTCGATCCACAAAGGAAATGGGTACCTGTTGTatggaagaagaaggagaagaaggagaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73500 lncRNA downstream 73927 33750289 ~ 33757122 (-) True G55034
TU73443 lncRNA downstream 273390 33555800 ~ 33557659 (-) False lamb2
TU73444 lncRNA downstream 273479 33555800 ~ 33557570 (-) False lamb2
TU73395 lncRNA downstream 322626 33507434 ~ 33508423 (-) True G54949
TU73393 lncRNA downstream 323826 33506362 ~ 33507223 (-) False G54947
XR_005639136.1 lncRNA upstream 25892 33857451 ~ 33875420 (-) True LOC120558540
TU73569 lncRNA upstream 34395 33865954 ~ 33951682 (-) True G55093
TU73568 lncRNA upstream 84536 33916095 ~ 33950009 (-) True G55092
TU73600 lncRNA upstream 120706 33952265 ~ 33952658 (-) True G55119
TU73615 lncRNA upstream 248499 34080058 ~ 34081936 (-) True G55128
XM_039799669.1 mRNA downstream 66445 33763783 ~ 33764604 (-) True taf13
XM_039800458.1 mRNA downstream 99577 33730330 ~ 33731472 (-) True LOC120559034
XM_039799262.1 mRNA downstream 120282 33696847 ~ 33710767 (-) True si:rp71-17i16.5
XM_039801162.1 mRNA downstream 146775 33618623 ~ 33684274 (-) True lamb2l
XM_039801839.1 mRNA upstream 123767 33955326 ~ 33963940 (-) True LOC120559811
XM_039801837.1 mRNA upstream 123767 33955326 ~ 33961162 (-) False LOC120559811
XM_039801836.1 mRNA upstream 123767 33955326 ~ 33961158 (-) False LOC120559811
XM_039801838.1 mRNA upstream 123767 33955326 ~ 33960964 (-) False LOC120559811
XM_039801847.1 mRNA upstream 302700 34134259 ~ 34165964 (-) False snphb
TU73247 other downstream 943759 32880193 ~ 32887290 (-) True G54834
TU73146 other downstream 1057563 32767357 ~ 32773486 (-) True G54756
TU73036 other downstream 1509097 32316960 ~ 32321952 (-) False LOC120558955
TU73035 other downstream 1518271 32306922 ~ 32312778 (-) False LOC120558955
unassigned_transcript_235 other downstream 2603918 31227060 ~ 31227131 (-) True trnaq-uug_1
TU73607 other upstream 192459 34024018 ~ 34127495 (-) False G55124
TU73620 other upstream 256411 34087970 ~ 34093118 (-) True G55131
TU73610 other upstream 286345 34117904 ~ 34127495 (-) False G55124
TU73658 other upstream 458847 34290406 ~ 34290887 (-) False ntsr1
XR_005639223.1 other upstream 1438339 35269898 ~ 35277854 (-) True LOC120559165

Expression Profile