RNA id: TCONS_00074078


Basic Information

Item Value
RNA id TCONS_00074078
length 809
RNA type processed_transcript
GC content 0.52
exon number 6
gene id XLOC_037727
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 18310228 ~ 18568927 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGACAACAAGTTCAGCGAGGCAACGGCAGTGCTCTTCACGTGGATCGACAGAGGCGAGGTGAACCGGCGCTCAGCGAATCATTTCTACTCCATGATCCAGTCGGCCAACAGCCACGTGCGGCGCCTAATGAGTGAGAAAGCGCAGCACGAAGAGGAGATGGAGCTGGCCAAAGAACACTTTAAGAATTCCCTGCTTGCCATCCTCACACAATGAGCTGAGAAATGCTCACAGTGAAGAGATCATGGGAATACGGAGAGAAGAGGAAATGGAGATGTCAGATGAAGACTCGGACGAAAACCCCTGCAAAAAGATCAGATTAGAGGACTCGGTGTTGTCCGCGCAGTCATGTGCTCTGCGGGAGGAAAACGACAGTCTGCGCTGGCAGCTGGATGCTTATAGGAACGAGGTGGAGCTGCTGAAGAAGGAGCAGGGCAAAATGTATCGGACTGAGGAGGACCACACACATGAACAGCAGCTTCACTTCCTACAGCAGACCATGCAGAACATGCAGCAGCAACTGCTTCGGCTCCAGGAAGAGCTGAAGGGAAAGGAGCTGGAGCTGGAGCAGGCCAGAGATGAGCAGCGCTACCTAGAGGGAGAGGTGATCAGCCTCAGAGAAAAGCTGCTGAACGCCATGGAGTCAGTAGATATGACAAACCACAACTCTGAATGCCATGAAAAGGCAGTCAATGGCACCGCAGCACTCTACCACCATCGAGAGAAGAATAACGAGACGGTCATTTGGGGTCCTTTGAGATCAGAGAAAGAGGCTCTCTTGCTCGGTAATTATTCCAACTCTGCTTCATG

Function

GO:

id name namespace
GO:0007624 ultradian rhythm biological_process
GO:0001944 vasculature development biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-328 Predicted to enable protein-disulfide reductase activity. Acts upstream of or within vasculature development. Predicted to be located in external side of plasma membrane. Predicted to be active in plasma membrane. Is expressed in chondrocyte; heart; post-vent region; and posterior cardinal vein. Orthologous to human ENOX1 (ecto-NOX disulfide-thiol exchanger 1).

Ensembl:

ensembl_id ENSDART00000131397

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075327 lncRNA downstream 384278 17919120 ~ 17938305 (-) True XLOC_037725
TCONS_00075326 lncRNA downstream 400385 17919120 ~ 17922198 (-) False XLOC_037725
TCONS_00074972 lncRNA downstream 1544735 16776187 ~ 16777848 (-) True XLOC_037718
TCONS_00074062 lncRNA downstream 2169033 16151225 ~ 16153550 (-) False XLOC_037717
TCONS_00074060 lncRNA downstream 2189123 16129319 ~ 16133460 (-) False XLOC_037717
TCONS_00075328 lncRNA upstream 198188 18572373 ~ 18577193 (-) True XLOC_037728
TCONS_00075329 lncRNA upstream 346491 18720676 ~ 18724456 (-) True XLOC_037729
TCONS_00075330 lncRNA upstream 534018 18908203 ~ 18911600 (-) False XLOC_037732
TCONS_00075331 lncRNA upstream 534018 18908203 ~ 18911622 (-) False XLOC_037732
TCONS_00074084 lncRNA upstream 534018 18908203 ~ 18911715 (-) False XLOC_037732
TCONS_00074075 mRNA downstream 106939 18162115 ~ 18215644 (-) True XLOC_037726
TCONS_00074074 mRNA downstream 539009 17540619 ~ 17783574 (-) True XLOC_037724
TCONS_00074073 mRNA downstream 904917 17415425 ~ 17417666 (-) True XLOC_037723
TCONS_00074072 mRNA downstream 904955 17415248 ~ 17417628 (-) False XLOC_037723
TCONS_00074070 mRNA downstream 1036253 17045875 ~ 17286330 (-) True XLOC_037722
TCONS_00074079 mRNA upstream 358320 18732505 ~ 18735256 (-) False XLOC_037730
TCONS_00074080 mRNA upstream 358893 18733078 ~ 18743012 (-) False XLOC_037730
TCONS_00074081 mRNA upstream 358985 18733170 ~ 18814737 (-) False XLOC_037730
TCONS_00074082 mRNA upstream 359084 18733269 ~ 18742704 (-) True XLOC_037730
TCONS_00074083 mRNA upstream 501851 18876036 ~ 18877597 (-) True XLOC_037731
TCONS_00074071 other downstream 904955 17415241 ~ 17417628 (-) False XLOC_037723
TCONS_00074065 other downstream 1498408 16823285 ~ 16824175 (-) True XLOC_037719
TCONS_00074054 other downstream 2423030 15898473 ~ 15899553 (-) False XLOC_037714
TCONS_00074051 other downstream 2533219 15782048 ~ 15789364 (-) False XLOC_037713
TCONS_00074050 other downstream 2633524 15685746 ~ 15689059 (-) True XLOC_037711
TCONS_00074090 other upstream 655168 19029353 ~ 19029467 (-) True XLOC_037735
TCONS_00074096 other upstream 973939 19348124 ~ 19348239 (-) True XLOC_037740
TCONS_00074104 other upstream 1341397 19715582 ~ 19716857 (-) True XLOC_037748
TCONS_00074105 other upstream 1376166 19750351 ~ 19756068 (-) False XLOC_037749
TCONS_00074106 other upstream 1380260 19754445 ~ 19756102 (-) True XLOC_037749

Expression Profile

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