RNA id: TU73623


Basic Information

Item Value
RNA id TU73623
length 2018
lncRNA type inter_gene
GC content 0.42
exon number 5
gene id G55133
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 34097507 ~ 34107307 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcAAGTGGAGAGCacttcttttattttaaatatgtcGTCATTGGTTTAGTCTGCATACAGTAACGTATCAGCAAATAACTACACAGCACAGAGGTGGACTGCTGCCGCACCAGTTGCAGCTTGGCCAATATGTAACATCGACGGCCACTGTCAAAATCTGACAGCCAGGCTAGCATATTCCTTCATTAAACTCCATTTAAAACTATTTATTTGAGATACAAAACCACTAGGGTGCCCGTGTGTCGGCTTCTTTTTCTACCACAACACAGACTTCAGTTAGGCATTGTGGTACTTTAACTGacactggcaaaaaaaaactgaaaaacattatCTTTCATCATAGGCTAAGCTTTGCTGATTCTCAGAGATAGAAAGTTGGCATTTGAAAAATACACGATTGAAGTTGTTACACAAAATAATGGGGGAAGTCACAATTTGATTGATTCCTCAACCCCCTTTTGTAAATTTCAAGCATTTCCTTTTTTgtctaagaaaaaaataatccaaTTGATGTGCATCAAGGCAAATCCTGTCTTTGCACTGTTCAACCTGTCTATGGCTTTAAATGGGGTTTAAGGACTTGGCGAGATGAGAAGGTGATAATAATGCAAATTGGATGCAAAGCTTTAACATGTACATACTAGGGTTTCCTTTGGGCCTAGAACATGCAGACAGGGCAAGGTAGTAACCATGTGTCTGGTGAGAATATTTAGGCACACATTAGAACTATctacaactgtgattggttctCCTTTGGGCCAATTACCCCTTTCGAGCTCACGCTTCAGTTAACAATTTAAATACAGTGACACTATATAAACATGGGCATTTAACGTAGCAAACTTAATTCCTGTGTTGCACCATGAAGGCCTCCCTGTCACTTGACATTTCCCCACAGGTAGCCACTAAATTCAACACTACGCCTTACTGTGTCTCTCTAGCAGAAACACGTCTCATTTGTTCTGATTTTCAACTGGATAGGGATACAAATGtgtgcttttcattttcttttgtacACGTTTTTGTTTCTCTAATATAACAAGCACCAGCTCTCGATCATTATAATACTAGTACGCATTGACTCATAAGAGATGAATGTCACTACTAGTGGTTCATTGGTATTTTGTACTTCTCAGCGTAACCATGCACAAccaacattttcagaaaacaaagaaaagtaaAGCGCAGTTCAAAAGAATTCAAGATTAGGAACATGGAGGTTTGAAAGGTTATGGCCCATGGTTTTTTAGGAGGAAGAATATGCTGAAAAATATAATTCACTCAGTCACAGagacaaaataacacaaactgTCATATTTGGATGAAAAAAGTAGTGGAACTATAGACTCAAGCCTCTTATAGAATCAAGTGCAGACTCTCCTAGCTTCTCTCCAGGTCATCCAGGTAGGAAGTCACacagaacaaaaaaaaaacaggtggtGAATCTGTTTCATTCCAAACCCAGCAGCTCAACGTCAAAGATGAGGGTGGCGTTAGGAGGAATGATGCCCGGGTGGCCTTTGTTTCCATAAGCGTATTCAGGTGAGCAGGTCAACTTGGCCCTTTGACCAACACTCATCTGCACTACACCCTCTTCCCAGCCTCGGATCACTTCCTGTTTGCCAATCTTGAACCTGAAAGGCTTGTCCCTATCACGAGACGAGTCAAACTTACGTCCATCTGTCAGGGAGCCAACATAATGCACCACACACGTCTGTCCTTTTTTGGGGAAAGTCCTTCCGTCGCCCGGGGTTATAGTCTCGATTTCGACtcccatttctttctttttttgcggTGTGTTCCGGAGATGTCCCTGCGCCCGGCTACGCTCTTCTTCccgcagtctgtctgtctgctcctcCAGCGGATGTtctcagctgtctgtctctctctctctctctttctgtctctctacaGGGAGGTCCAGTGtcaattatttatattatacaaCAACACTTCCGCCCGCAACCTCCAAAATAAAACCATAGACAGTGAAAGGAAAAACCCGCACAGAGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73615 lncRNA downstream 15571 34080058 ~ 34081936 (-) True G55128
TU73600 lncRNA downstream 144849 33952265 ~ 33952658 (-) True G55119
TU73569 lncRNA downstream 145825 33865954 ~ 33951682 (-) True G55093
TU73568 lncRNA downstream 147498 33916095 ~ 33950009 (-) True G55092
XR_005639136.1 lncRNA downstream 222087 33857451 ~ 33875420 (-) True LOC120558540
TU73609 lncRNA upstream 10597 34117904 ~ 34122520 (-) True G55124
TU73611 lncRNA upstream 10597 34117904 ~ 34127495 (-) False G55124
TU73627 lncRNA upstream 20931 34128238 ~ 34128796 (-) True G55137
TU73659 lncRNA upstream 159488 34266795 ~ 34267033 (-) True G55166
TU73718 lncRNA upstream 272758 34380065 ~ 34407170 (-) False G55190
XM_039801839.1 mRNA downstream 133567 33955326 ~ 33963940 (-) True LOC120559811
XM_039801837.1 mRNA downstream 136345 33955326 ~ 33961162 (-) False LOC120559811
XM_039801836.1 mRNA downstream 136349 33955326 ~ 33961158 (-) False LOC120559811
XM_039801838.1 mRNA downstream 136543 33955326 ~ 33960964 (-) False LOC120559811
XM_039799669.1 mRNA downstream 332903 33763783 ~ 33764604 (-) True taf13
XM_039801847.1 mRNA upstream 26952 34134259 ~ 34165964 (-) False snphb
XM_039801846.1 mRNA upstream 26952 34134259 ~ 34165964 (-) True snphb
XM_039799249.1 mRNA upstream 129259 34236566 ~ 34291069 (-) True ntsr1
XM_039799951.1 mRNA upstream 226291 34333598 ~ 34375503 (-) False slco4a1
XM_039799952.1 mRNA upstream 226291 34333598 ~ 34375503 (-) True slco4a1
TU73620 other downstream 4389 34087970 ~ 34093118 (-) True G55131
TU73247 other downstream 1210217 32880193 ~ 32887290 (-) True G54834
TU73146 other downstream 1324021 32767357 ~ 32773486 (-) True G54756
TU73036 other downstream 1775555 32316960 ~ 32321952 (-) False LOC120558955
TU73035 other downstream 1784729 32306922 ~ 32312778 (-) False LOC120558955
TU73610 other upstream 10597 34117904 ~ 34127495 (-) False G55124
TU73658 other upstream 183099 34290406 ~ 34290887 (-) False ntsr1
XR_005639223.1 other upstream 1162591 35269898 ~ 35277854 (-) True LOC120559165
XR_005639224.1 other upstream 1162593 35269900 ~ 35277854 (-) False LOC120559165
XR_005639222.1 other upstream 1162593 35269900 ~ 35277854 (-) False LOC120559165

Expression Profile