RNA id: XM_039799249.1


Basic Information

Item Value
RNA id XM_039799249.1
length 2638
RNA type mRNA
GC content 0.49
exon number 4
gene id ntsr1
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 34236566 ~ 34291069 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCTGTCGTGGCCAATATAAAAAGCTGCTCTGCTCCGACTTTCTGAGACTGAACCCATTTTTTTCCTCAGGCTGACGAAGAAGTGAATATGCCCACTCAGTGCAACCGACCGTACTTTCTGTGTACATGTTTTCAAGTATAGATGCATCATGGATTTCAACTTAACGCTCTCGGGGCGCGACTTGGCCGGCTTGGGTGCGAGACTCTTTAGGAATAACTCGCTGTTTCCGTTTGAAAACAACACCACCGATTCCAAAACGGAGGAGGAAGACTTGGAAGTCAACACGGACGTTTACTCCAGAGTGATAGTCACTGTCATCTACGCTGCGCTGTTCGCCGTGGGCACCCTGGGGAACTCCATCACCCTGTACACCCTGCTGACCAAAAAGACCCTGCAGAACCTCCAGAGCACGGTGCATTACCACCTGGCCAGCCTCGCCGTCTCCGACCTGCTCATCCTCGTCCTCTCCATGCCCATCGAGATCTACAACTTCATCTGGTTCCACCACCCGTGGGTGTTCGGGGACGCCGTGTGCAGGGGTTACTACTTCCTCCGGGATAGCTGCTCGTACGCCACGGCGCTCAACATCACCAGCCTGAGCGTGGAGCGCTACATGGCCATCTGTCACCCGTTCAAAGCCAAGAGCATCATGTCCCGCAGCCGCACCAAGAAGCTCATCAGCGCCATGTGGCTCGCGTCCTTCGCGCTCGCCCTGCCGATGCCCTTCGTCATGGGCCAGGTGATGCGTAGAGGCGAGAAGATATGCACCGCGATCGTCTCTCCTGTCACCATTAAGACCGTGCTGCAGGTAAACGCCTTTCTGTCCTTTGTGATACCCATGGTGGCCATATCGGCACTGAACGGAGTCATAGCCAATCAGCTGTTGCGAATGTTCCGTGAGGCAGAGCAAGAAAACCGTGTCTGCATCATTGGGGGAAATCCCACCATGCTGAATGCCACCACGGAGCCCAACCGTGCTCGCTCGCTTCGCCATGGAGTTCTTGTTCTCCGAGCGGTGGTCATAGCCTTCGTGGTCTGCTGGCTGCCCTATCACGCTCGCCGCCTCATGTTTTGCTACGTCTCTGACTGGTCCGATGACTTGTATGACTTCTACCACTATTTCTACATGCTGACCAACGCCCTGTTTTACGTCAGTTCGGCCATCAATCCAATCCTCTACAACCTGGTGTCAGCCACCTACCGCCAGATCTTCTTCTCCACGCTGCGCTACTTCTGCATGCCCTGCCGCCATACACCTAGGAGGCGCCCCCACCCTCTAACCCGCCGCTCCATAAGCATCTCCAGCAACCACACCCTCTCCACCAACATCATCAAAGAGACGGCGTACTGATTGGGCTGCAAAGGAATACACTTTCTCATGCTATAAACCCACCTGCTGCCACTTTGTGATTACTGGTCCAACTTACTTCATAAAGGACATTCTGGAACTGGTTTAGAGAGATAACTGGGGTTGTTGTATCATGTGGGGCCAGATGCACATTttatatgtaaatgttttataCTGTGTATTTCTATACATGCTTTTATTGGACAGTGTACACTACTGTTTCAGTGTTTTTAAGATTCAACTTATAAACCTCTTGGAAGAACTTTCTCCAGAAACATGGCCTTTGGCAATACTTTCACCACTTGCAAAGGTTCTGATGTAACCCTCACACAAGGAGCAAATAGTTCGTATTTCTCTTTCTTGAATCCAAGTTGCATTGACAGCTGTATGGGAAGAATCTCTTGCATCATTACCACACTTACTTCTCTTGACTCATTGGCTTTATCCCGAACAGCTTTGAAGCAAACATTTAGTTGAACAGAGGGAGAGTTCAGATAATAGCGAGTCCTAAGACTCTGGTCCATGGAATTTTGTAAATAGTGCAGACAAAGATTATGATTATTTCTGGTAATAGCTTActgcattcatttaaaaatgtgaacTAAGTGTGTTGACAGAGAAATGTctgtgattgattttttttgaaGTATTTGGACATTAGTGACCATGTGGAGCAAATAACACATGTTGGAAAGTAATTAGTGCATAGAAAACAGGATGCATTCCTGAAAATGTTGGAAAACAGGAGCACTTCAACAGACACAGAGCACCCAGTCCAACACACCTGCTGCTTGAGCAATCAGAGGCAGGGAGAGATTTCCTTTAGGAACAACACCAAGATGTTAAACAATCTGGACTCTCCTATCAGTTATTAGATGATTTGATTGCATCTACATAGAAGTCTCCTTCCAGAACAAGATTTTAACTATAGCGGGTTATTATGCCATAAACATCAATATTGGCCTCATGGTGTATGTCCATCAGCGGCAATGTTCGGTGCCAAGTGTTGtttgggcagtggtggcctagagGTTAGAGAAGAGAGCTTGTGACCAGGAGGTcatcggttcaatccccagaccaatAGGATAAAATTAATTACCGCTGAGGTGCCTTcccttaaccccaactgctccagtggagctgctcagtggccagcagatcagactatGGTTgtgctgggcagcttccaggtgtgaatgtgtgcaactgtgtgaatgtgatcagggcgttcctgcaagaGAGGCTGCCCCTCAGTGAacctcccctgaataaataaaggttaaata

Function

GO: NA

KEGG:

id description
K04211 NTSR1; neurotensin receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73627 lncRNA downstream 107770 34128238 ~ 34128796 (-) True G55137
TU73611 lncRNA downstream 109071 34117904 ~ 34127495 (-) False G55124
TU73609 lncRNA downstream 114046 34117904 ~ 34122520 (-) True G55124
TU73623 lncRNA downstream 129259 34097507 ~ 34107307 (-) True G55133
TU73615 lncRNA downstream 154630 34080058 ~ 34081936 (-) True G55128
TU73718 lncRNA upstream 88996 34380065 ~ 34407170 (-) False G55190
TU73721 lncRNA upstream 88996 34380065 ~ 34407170 (-) True G55190
TU73727 lncRNA upstream 102244 34393313 ~ 34407170 (-) False G55190
TU73741 lncRNA upstream 266112 34557181 ~ 34557690 (-) True G55203
TU73906 lncRNA upstream 539300 34830369 ~ 34878720 (-) True G55328
XM_039801847.1 mRNA downstream 70602 34134259 ~ 34165964 (-) False snphb
XM_039801846.1 mRNA downstream 70602 34134259 ~ 34165964 (-) True snphb
XM_039801839.1 mRNA downstream 272626 33955326 ~ 33963940 (-) True LOC120559811
XM_039801837.1 mRNA downstream 275404 33955326 ~ 33961162 (-) False LOC120559811
XM_039801836.1 mRNA downstream 275408 33955326 ~ 33961158 (-) False LOC120559811
XM_039799951.1 mRNA upstream 42529 34333598 ~ 34375503 (-) False slco4a1
XM_039799952.1 mRNA upstream 42529 34333598 ~ 34375503 (-) True slco4a1
XM_039799950.1 mRNA upstream 42529 34333598 ~ 34353531 (-) False slco4a1
XM_039800655.1 mRNA upstream 499544 34790613 ~ 34842286 (-) False plagl2
XM_039800653.1 mRNA upstream 499544 34790613 ~ 34842286 (-) True plagl2
TU73607 other downstream 109071 34024018 ~ 34127495 (-) False G55124
TU73610 other downstream 109071 34117904 ~ 34127495 (-) False G55124
TU73620 other downstream 143448 34087970 ~ 34093118 (-) True G55131
TU73247 other downstream 1349276 32880193 ~ 32887290 (-) True G54834
TU73146 other downstream 1463080 32767357 ~ 32773486 (-) True G54756
XR_005639223.1 other upstream 978829 35269898 ~ 35277854 (-) True LOC120559165
XR_005639224.1 other upstream 978831 35269900 ~ 35277854 (-) False LOC120559165
XR_005639222.1 other upstream 978831 35269900 ~ 35277854 (-) False LOC120559165
TU74116 other upstream 1113535 35404604 ~ 35409766 (-) True G55492
XR_005639221.1 other upstream 1596032 35887101 ~ 35898736 (-) False si:ch73-70k4.1

Expression Profile